View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_23 (Length: 453)
Name: NF19748_low_23
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Original strand, 55081638 - 55082057
Alignment:
| Q |
16 |
attcactaactttataattgattttctgtagtatttcaacaaataggtaaatgctttgtttacaatatacaaattacaatagttgcgaagatatgttaca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55081638 |
attcactaactttataattgattttctgtagtatttctacaaataggtaaatgctttgtttacaatatacaaattacaatagttgcgaagatacgttaca |
55081737 |
T |
|
| Q |
116 |
gggccaaacataataaaaaatctttactaatatacactcttactcctattaagatcatagaaacaaattgcatcaatttttcaccacaaagctccattct |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55081738 |
gggccaaacataataaaaaatctttactattatacactcttactcctattaagatcatagaaacaaattgcatcaatttttcaccacaaagctccattct |
55081837 |
T |
|
| Q |
216 |
tgtcataaaattttctcctgattggatgatccacaaagcaaattaaccaggggcaaattctgcacacaaggaaccaaatctttgtcctagcctctgctaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55081838 |
tgtcataaaattttctcctgattggatgatccacaaagcaaattaaccagggacaaattctgcacacaaggaaccaaatctttgtcctagcctctgctaa |
55081937 |
T |
|
| Q |
316 |
taggaaccaatacattatagagtctcaaattttgcacacagaaaaccaaatcacctaatacataacgaagataacgagctcatgctattgggcaatcgga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
55081938 |
taggaaccaatacattatagagtctcaaattttgcacacagaaaaccaaatcacctaatacataacgaagataacgagctcatgctattggacaattgga |
55082037 |
T |
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| Q |
416 |
gaatctcctgacatttattc |
435 |
Q |
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|||||||||||||||||||| |
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| T |
55082038 |
gaatctcctgacatttattc |
55082057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 379
Target Start/End: Complemental strand, 254949 - 254807
Alignment:
| Q |
233 |
ctgattggatgatccacaaagcaaattaaccaggggc-aaattctgcacacaaggaaccaaatctttgtcctagcctctgctaataggaaccaatacatt |
331 |
Q |
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|||||||||||||||||||| |||||||| || || | |||||| |||| | ||| |||||||||||||||| | || ||||| | |||||| |
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| T |
254949 |
ctgattggatgatccacaaaccaaattaatcacggaccaaattccacacaaagagaatcaaatctttgtcctagacgctcttaataata-----tacatt |
254855 |
T |
|
| Q |
332 |
atagagtctcaaattttgcacacagaaaaccaaatcacctaatacata |
379 |
Q |
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|||||| |||||||| ||||||| | ||||||| |||||||||||||| |
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| T |
254854 |
atagagcctcaaattctgcacactggaaaccaagtcacctaatacata |
254807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 29272029 - 29272118
Alignment:
| Q |
16 |
attcactaactttataattgattttctgtagtatttcaacaaataggtaaatgctttgt----ttacaatatacaaattacaatagttgc |
101 |
Q |
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|||||| |||||||||| | ||| | |||||||||| || ||| ||||||| | ||||| ||||||| ||||||||||||||||||| |
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| T |
29272029 |
attcaccaactttataaattattctttgtagtatttgaagaaacaggtaaaggatttgtatatttacaatctacaaattacaatagttgc |
29272118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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