View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_30 (Length: 387)
Name: NF19748_low_30
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 387
Target Start/End: Complemental strand, 36573722 - 36573342
Alignment:
| Q |
7 |
caaatctcatcctaaacggtgtaaagtggatactaatgccactttaataaataatagtttttcatatttttatttcnnnnnnngatatgtatgatttatg |
106 |
Q |
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| T |
36573722 |
caaatctcatcctaaacggtgtaaagtggatgctaatgccactttaataaataatagtttttcatatttttatttcaaaaaaagatatgtatgatttatg |
36573623 |
T |
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| Q |
107 |
acttttggagtaccttattttgagctatttctgcttgaattccaagtatgccagcaacaacatccatgagaatgacaacaatacatacaaggaaaccata |
206 |
Q |
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| T |
36573622 |
acttttgaagtaccttattttgagctatttctgcttgaattccaagtatgccagcaacaacatccatgagaatgacaacaatacatacaaggaaaccata |
36573523 |
T |
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| Q |
207 |
gtttctaaccattttcctatacaattcaaagttggtgcaaaaaataatgttaggttccttgttctttaactcctaactttaatagttaagcataatatgt |
306 |
Q |
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| T |
36573522 |
gtttctaaccattttcctatacaattcaaagttgatgcaaaaaataatgttaggtaccttgttctttaactcctaactttaatagttaagcataatatgt |
36573423 |
T |
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| Q |
307 |
tataaaattggaggaatataagaataaagatttggccaggtttgcaatgtattatcatgtatggaagtaattagcttattt |
387 |
Q |
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| T |
36573422 |
tataaaattggaggaatataagaataaagatttggccaggtttgcaatgtattatcatgtatggaagtaattagcttattt |
36573342 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 2549317 - 2549412
Alignment:
| Q |
115 |
agtaccttattttgagctatttctgcttgaattccaagtatgccagcaacaacatccatgagaatgacaacaatacatacaaggaaaccatagttt |
210 |
Q |
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| T |
2549317 |
agtaccttgttttgagttatctcggcttgaattcctagtatgcctgcaacaatatccatcaccatgacaagtatgcaaataaggaagccatagttt |
2549412 |
T |
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