View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_33 (Length: 372)
Name: NF19748_low_33
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 3053955 - 3054304
Alignment:
| Q |
18 |
ccaacaattttgtcacagaaagaaatcaaatatacagaaatagaatgaattcaattccacataaaaaaccataacttccatccacaaaaagactcgactc |
117 |
Q |
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| T |
3053955 |
ccaacaattttgtcacagaaagaaatcaaatatacagaaatagaatgaattcaattccacataaaaaaccataacttccatccacaaaaagactcgactc |
3054054 |
T |
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| Q |
118 |
gtaaactcgtaaaagtatcgaactatcttccagaagtaataagactgttagtcataggtggtgccattgagggaccattggattgcctaaaaggtacaat |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054055 |
gtaaactcgtaaaagtattgaactatcttccagaagtaataagactgttagtcataggtggtgccattgagggaccattggattgcctaaaaggtacaat |
3054154 |
T |
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| Q |
218 |
aggaggagcacgatcatgcatatcaagtggaagttcaggtaatgccatttcaagttgaagaaccttaattacttcataagccttaggtctttctttatca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054155 |
aggaggagcacgatcatgcatatcaagtggaagttcaggtaatgccatttcaagttgaagaaccttaattacttcataagccttaggtctttctttatca |
3054254 |
T |
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| Q |
318 |
tttgaatgagtacaccataaccctacaataagcaaactcttcatctcact |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3054255 |
tttgaatgagtacaccataaccctacaataagcaaactcttcatttcact |
3054304 |
T |
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