View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_35 (Length: 347)
Name: NF19748_low_35
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 3572072 - 3572399
Alignment:
| Q |
1 |
atacagttgagcacgctccaatcactgatacatttacatgacatctgcagggggataatggaccaacatgttctttcgcctttgcatgaattctcttgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572072 |
atacagttgagcacgctccaatcactgatacatttacatgacatctgcagggggataatggaccaacatgttctttcgcctttgcatgaattctcttgtg |
3572171 |
T |
|
| Q |
101 |
aattacttttggatacacgggaaggtatcgatgaatagtttcatcttcattttgttgtcgtttttcaatctttcgatttacttatcagtctcgaatgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572172 |
aattacttttggatacacgggaaggtatcgatgaatagtttcatcttcattttgttgtcgtttttcaatctttcgatttacttatcagtctcgaatgtca |
3572271 |
T |
|
| Q |
201 |
tcactatatttccttgtgaatgaatgcgatgtgagtccagcagttaagccatgtagagtaatattgaaccagacacttgtttcattcctggaaaataatg |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572272 |
tcactaaatttccttgtgaatgaatgcgatgtgagtccagcagttaagccatgtagagtaatattgaaccagacacttgtttcattcctggaaaataatg |
3572371 |
T |
|
| Q |
301 |
taacatatggtgaattgctgatacaggg |
328 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
3572372 |
taacatatggtgaattgctgatacaggg |
3572399 |
T |
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