View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_36 (Length: 343)
Name: NF19748_low_36
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 104 - 327
Target Start/End: Complemental strand, 35803291 - 35803067
Alignment:
| Q |
104 |
acgagatagtagtgaggcacacactgcattgctacacaatatctattcaaatcggctggataaagtctcttcttcttgagggaagaaaagagaag---tt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
35803291 |
acgagatagtagtgaggcacacactgcattgctacacaatatctattcaaattggctggataaagtctcttcttctagagggaagaaaagagaagaagtt |
35803192 |
T |
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| Q |
201 |
caaaacttcataaatgaaggtgtttgtcgattagataaactgaaagaagagggtttcatatcaagcttagtgtatgatgatgacgttatcactctcttga |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35803191 |
caaaacttcataaatgaaggtgtttatcgattagataaactgaaagaagagggtttcatatcaagcttagtgtatgatgatgatgttatcactctcttga |
35803092 |
T |
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| Q |
301 |
aggagagacttggggtgaaatcactcc |
327 |
Q |
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|| ||||||||||||||||||||||| |
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| T |
35803091 |
ag--gagacttggggtgaaatcactcc |
35803067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 172 - 327
Target Start/End: Original strand, 35854083 - 35854247
Alignment:
| Q |
172 |
cttcttcttgagggaagaaaagagaag---ttcaaaacttcataaatgaaggtgtttgt------cgattagataaactgaaagaagagggtttcatatc |
262 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
35854083 |
cttcttctatagggaagaaaagagaagaagttcaagacttcataaatgaaggtgtttctgtttatcgattagataaactgaaagaagagggtttcatatc |
35854182 |
T |
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| Q |
263 |
aagcttagtgtatgatgatgacgttatcactctcttgaaggagagacttggggtgaaatcactcc |
327 |
Q |
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| T |
35854183 |
aagcttagtgtatgatgatgaggttataactctcttgaaggagaggcttggggttaaatcactcc |
35854247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 35803359 - 35803276
Alignment:
| Q |
12 |
tatgacaatagtccgtatgacaatccttatatcaatttttatcactatgctgaagatagtagtgaggcacgagatagtggtgag |
95 |
Q |
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| T |
35803359 |
tatgacaatggtctgtatgacaatccttatatcaatttttatcgctatgctgaagatagtagtgaggcacgagatagtagtgag |
35803276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 35851816 - 35851984
Alignment:
| Q |
6 |
ggtctgtatgacaatagtccgtatgacaatccttatatcaatttttatcactatgctgaagatagtagtgaggcacga---gatagtggtgagacacgac |
102 |
Q |
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||||||||||||||| || ||||||||||| |||| |||| ||||||||||| |||||||||||||||||||||| |||||| ||||| ||| | |
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| T |
35851816 |
ggtctgtatgacaatgatctgtatgacaatctttatggcaatccttatcactatgttgaagatagtagtgaggcacgacgagatagtagtgaggcacaa- |
35851914 |
T |
|
| Q |
103 |
tacgagatagtagtgaggcacacactgcattgctacacaatatctattcaaatcggctggataaagtctcttctt |
177 |
Q |
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| T |
35851915 |
-----gatagaactgaggcagaaactgcattgctacataatatctattcaaattggctggttaaagtctcttctt |
35851984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 144 - 327
Target Start/End: Original strand, 10520559 - 10520751
Alignment:
| Q |
144 |
atctattcaaatcggctggataaagtctcttcttcttgagggaagaaaagagaag---ttcaaaacttcataaatgaaggtgtttgtcgattagataaac |
240 |
Q |
| |
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|||| ||||||| ||||||| |||| ||||| | | ||||||||| |||||||| || |||||||||||||||||||||| | || | ||||||||| |
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| T |
10520559 |
atctgttcaaattggctggagaaagactcttatcttagagggaagagaagagaagaagttgaaaacttcataaatgaaggtgtctatcaagtagataaac |
10520658 |
T |
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| Q |
241 |
tgaaagaagagggtttcatatcaagcttagtgtatgatg---atgacgttatcactctcttgaaggagagactt---ggggtgaaatcactcc |
327 |
Q |
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| ||| | ||||||||||||||||| |||||| |||||| |||| ||||||| ||| |||||| |||||||| |||||||||||||||| |
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| T |
10520659 |
taaaaaatgagggtttcatatcaagtttagtgcatgatgatcatgaggttatcaatctgttgaagaagagacttgggggggtgaaatcactcc |
10520751 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 45881976 - 45881897
Alignment:
| Q |
204 |
aacttcataaatgaaggtgtttgtcgattagataaactgaaagaagagggtttcatatcaagcttagtgtatgatgatga |
283 |
Q |
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|||||||||||||||||||| | || | |||| | |||||||||||||||||||||| ||||| || | ||||||||||| |
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| T |
45881976 |
aacttcataaatgaaggtgtctatcaagtagacagactgaaagaagagggtttcataacaagcatactctatgatgatga |
45881897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 45862558 - 45862515
Alignment:
| Q |
141 |
aatatctattcaaatcggctggataaagtctcttcttcttgagg |
184 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
45862558 |
aatatctattcaaattggctggataaagtctcttcttctagagg |
45862515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 47292834 - 47292920
Alignment:
| Q |
237 |
aaactgaaagaagagggtttcatatcaagcttagtgtatgatgatgacgttatcactctcttgaaggagagacttggggtgaaatca |
323 |
Q |
| |
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|||||||||||||||||||||||||||| |||| | | ||||| || ||||| ||| |||| ||||| ||||||||||||||| |
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| T |
47292834 |
aaactgaaagaagagggtttcatatcaaacttactttgcgatgacgaggttattactagtttgattgagaggcttggggtgaaatca |
47292920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 264
Target Start/End: Complemental strand, 56209426 - 56209299
Alignment:
| Q |
141 |
aatatctattcaaatcggctggataaagtctcttcttcttgagggaagaaaagagaa----gttcaaaacttcataaatgaaggtgtttgtcgattagat |
236 |
Q |
| |
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||||||||||||||| |||| ||||||||||||||| | |||| ||||||| |||| || | || ||||||||||| ||||| | || | | || |
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| T |
56209426 |
aatatctattcaaattggctcgataaagtctcttctgcaagaggaaagaaaatagaaagatattgacaatttcataaatgatggtgtctatcaagcaaat |
56209327 |
T |
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| Q |
237 |
aaactgaaagaagagggtttcatatcaa |
264 |
Q |
| |
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| |||| ||||||||||||||||||||| |
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| T |
56209326 |
agactggaagaagagggtttcatatcaa |
56209299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 24351105 - 24351184
Alignment:
| Q |
204 |
aacttcataaatgaaggtgtttgtcgattagataaactgaaagaagagggtttcatatcaagcttagtgtatgatgatga |
283 |
Q |
| |
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|||||||||||||||||||||| || | | ||||| |||||||||||||| | ||||||| ||| ||||||||||||| |
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| T |
24351105 |
aacttcataaatgaaggtgtttatcaagttgataagctgaaagaagagggccttatatcaaatttaatgtatgatgatga |
24351184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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