View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_37 (Length: 339)
Name: NF19748_low_37
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 24854363 - 24854676
Alignment:
| Q |
17 |
atttttgatccagaaacaaattagataacaatgtaacaaaggatcacttaatagtacatcacatagaaaccaatatagcagaaaatcataatgcaccttc |
116 |
Q |
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|||||| ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||| ||||| |
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| T |
24854363 |
atttttcatctagaaataaattagataacaatgtaacaaaggatcacttaataatacatcacatagaaatgaaaatagcagaaaatcaaaatgcgccttc |
24854462 |
T |
|
| Q |
117 |
ttcaagcaatagagagaaattattgtttgggaaaataatatgctacgattgcataaacagtttgtacaacaacggaaacagagagcagcgtggcaacaaa |
216 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||| |
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| T |
24854463 |
ttcaagcaatggagagaaattattgtttggggaaataatatgctacgattgtataaacagtctgcacaacaatggaaacagagagcagcgtggcaacaaa |
24854562 |
T |
|
| Q |
217 |
gttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagattctttgaatg-ataatgcctcg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
24854563 |
gttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagattctttgaatgaaaaatgcctcg |
24854662 |
T |
|
| Q |
316 |
gagtatttgttcat |
329 |
Q |
| |
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|| || |||||||| |
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| T |
24854663 |
gactaattgttcat |
24854676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 24537900 - 24537746
Alignment:
| Q |
142 |
tttgggaaaataatatgctacgattgcataaacagtttgtacaacaacggaaacagagagcagcgtggcaacaaagttgtaattacggttcataaatctt |
241 |
Q |
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| T |
24537900 |
tttgggaaaattataggctaggattgcataaactgtctgcacaacagtgagaatagagagaaccgttgcaacgaagttgtaattgcggttcataaatcta |
24537801 |
T |
|
| Q |
242 |
aaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagattc |
296 |
Q |
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| T |
24537800 |
aacagccacccatgatgacggtatgtgaatgaactcgacactattttccagattc |
24537746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 295
Target Start/End: Original strand, 24797340 - 24797516
Alignment:
| Q |
116 |
cttcaagcaatagagagaaattattgtttgggaaaataatatgctacgattgcataaacagtttgtacaacaacggaaacagagagcagcgtggcaacaa |
215 |
Q |
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||||||||||| ||||| ||||||| ||||||||| ||| |||| |||||||||||| || || |||||| | || | |||| | ||| ||||| | |
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| T |
24797340 |
cttcaagcaatggagaggaattatt---tgggaaaattataggctaggattgcataaactgtctgcacaacagtgagaataaagagaaccgttgcaacga |
24797436 |
T |
|
| Q |
216 |
agttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatgaattcaacactattttccagatt |
295 |
Q |
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| T |
24797437 |
agttgtaattggggttcaaaaatcttaacagccaccaatgatgccggtatgtgaatgaactcgacactattttccagatt |
24797516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 24726599 - 24726707
Alignment:
| Q |
143 |
ttgggaaaataatatgctacgattgcataaacagtttgtacaacaacggaaacagagagcagcgtggcaacaaagttgtaattacggttcataaatctta |
242 |
Q |
| |
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||||||||||||||||| | ||||| ||||||||| || |||||| || |||||||| || | | ||||| ||||||||||| || |||| |||| ||| |
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| T |
24726599 |
ttgggaaaataatatgcgaggattgtataaacagtctgcacaacagcgagaacagagaccaccattgcaacgaagttgtaattgcgattcagaaatgtta |
24726698 |
T |
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| Q |
243 |
aaagccatt |
251 |
Q |
| |
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||||||||| |
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| T |
24726699 |
aaagccatt |
24726707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 291
Target Start/End: Original strand, 24696780 - 24696926
Alignment:
| Q |
142 |
tttgggaaaataatatgctacgattgcataaacagtttgtacaacaacggaaacagagagcagcgtggcaacaaagttgtaattacggttcataaatctt |
241 |
Q |
| |
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||||||||||||||| | || || || ||||||||| || |||||| || |||||||| || ||| ||||| |||||||| || ||||||| ||||||| |
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| T |
24696780 |
tttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagttgtagttgcggttcaaaaatctt |
24696879 |
T |
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| Q |
242 |
aaaagccatttatgacgatggtatgtgaatgaattcaacactattttcca |
291 |
Q |
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| || ||||| |||| || |||||||||||||| |||| ||| |||| |
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| T |
24696880 |
acaacccattcttgac---ggcatgtgaatgaattccacaccattatcca |
24696926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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