View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_40 (Length: 329)
Name: NF19748_low_40
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_40 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0196 (2 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 10306 - 10001
Alignment:
| Q |
19 |
tggagtataatttgctttggtgtgttcctgctaataatcatgtttgcattcatcatcatgatcctaaagacttcttcaagaagacccttttggagtctgg |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10306 |
tggagtataatttgctttagtgtgttcctgctaataatcatgtttgcattcatcatcatgatcctaaagacttcttcaagaagacccttttggagtctgg |
10207 |
T |
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| Q |
119 |
taagatattcaaacttgcaactggtatctgccataacaattatctttattggtctgctgcgtttatcgttaggaattaacaggtggttgatcgatctctt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| |
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| T |
10206 |
taagatattcaaacttgcaactggtatctgccataacaattatctttattggtctgctgcgtttatcgttaggaattaacggatggtggatcgatctctt |
10107 |
T |
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| Q |
219 |
tcatggattcacatggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggatgttttcttttttcatgtccttt |
318 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10106 |
tcatggattcacatggttgttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggatgttttcttttttcatgttcttt |
10007 |
T |
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| Q |
319 |
gcttct |
324 |
Q |
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| |||| |
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| T |
10006 |
gtttct |
10001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 41648302 - 41648223
Alignment:
| Q |
232 |
tggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggatgttttcttttttcat |
311 |
Q |
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| T |
41648302 |
tggttgttagtaagtttaattgtaagtcttcagataaaacaactaacaagaacatggttgtggatgttttctgttttcat |
41648223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 11661866 - 11661969
Alignment:
| Q |
200 |
ggtggttgatcgatctctttcatggattcacatggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggatgtt |
299 |
Q |
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|||||||| |||| ||||||||||||| |||||||| || |||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
11661866 |
ggtggttgctcgaactctttcatggatcaacatggttgtttgtaagtttaactataagtcttcagataaaacaactgccaagagcatggttttggatgtt |
11661965 |
T |
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| Q |
300 |
ttct |
303 |
Q |
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|||| |
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| T |
11661966 |
ttct |
11661969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 11633185 - 11633082
Alignment:
| Q |
200 |
ggtggttgatcgatctctttcatggattcacatggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggatgtt |
299 |
Q |
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|||||||| | || |||||||||||| |||||||||| | |||||||| | ||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
11633185 |
ggtggttgctagaactctttcatggactcacatggttgtcgataagtttatctataagtcttcggataaaacaactctcaagagcatggttgtggatgtt |
11633086 |
T |
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| Q |
300 |
ttct |
303 |
Q |
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|||| |
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| T |
11633085 |
ttct |
11633082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 11617050 - 11617153
Alignment:
| Q |
200 |
ggtggttgatcgatctctttcatggattcacatggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggatgtt |
299 |
Q |
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|||||||| | || ||||||||||| || |||||||| | |||||||| ||| || |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
11617050 |
ggtggttgctagaactctttcatggtttaacatggttgtcgataagtttatctgtcagccttcagatgaaacaacttacaagagcatggttgtggatgtt |
11617149 |
T |
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| Q |
300 |
ttct |
303 |
Q |
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|||| |
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| T |
11617150 |
ttct |
11617153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 11711851 - 11711796
Alignment:
| Q |
100 |
agacccttttggagtctggtaagatattcaaacttgcaactggtatctgccataac |
155 |
Q |
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| T |
11711851 |
agacccttttggagtctagtaagatattcaaacttgcagctagtttcttccataac |
11711796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 292
Target Start/End: Complemental strand, 11711703 - 11711611
Alignment:
| Q |
200 |
ggtggttgatcgatctctttcatggattcacatggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgt |
292 |
Q |
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| T |
11711703 |
ggtggttactcgaactctttcacggttcaacatggttgtttgtaagtttaactataagtcttcggataaaacaacttccacgagcatggttgt |
11711611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 11414 - 11495
Alignment:
| Q |
215 |
tctttcatggattcacatggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggat |
296 |
Q |
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|||||||||| ||||||||||| | ||||||||||| |||||| |||||| ||||||||| | | |||||||| |||||||| |
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| T |
11414 |
tctttcatggcttcacatggttgtcagtaagtttaactgtaagccttcagctaaaacaaccctcgagagcatgtttgtggat |
11495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 11250 - 11306
Alignment:
| Q |
99 |
aagacccttttggagtctggtaagatattcaaacttgcaactggtatctgccataac |
155 |
Q |
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||||||||| |||||| | |||||||||||||||||||| || || ||||||||||| |
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| T |
11250 |
aagacccttctggagtttagtaagatattcaaacttgcagctagtctctgccataac |
11306 |
T |
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