View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_51 (Length: 300)
Name: NF19748_low_51
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 4134104 - 4133829
Alignment:
| Q |
1 |
gtgtaccaaatatttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggacagcagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4134104 |
gtgtaccaaatatttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggacagcagg |
4134005 |
T |
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| Q |
101 |
aatgaacttgaagtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagttcctgattttaatgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4134004 |
aatgaacttgaagtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagttcctgattttaatgag |
4133905 |
T |
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| Q |
201 |
agatcagctggtaatcaagataaatgtagaacagattgtttggcaaattgtacttgtttggcatatgcatatgatc |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
4133904 |
agatcagctggtaatcaagataaatgtagaacagattgtttggtaaattgttcttgtttggcatatgcatatgatc |
4133829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 4144898 - 4144626
Alignment:
| Q |
12 |
atttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggacagcaggaatgaacttga |
111 |
Q |
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||||||||||||||| | |||||| |||||||||||| |||||| ||||||| | | ||||||||||||||||||||||| |||| |||| ||||||||| |
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| T |
4144898 |
atttgtagttgttttgatgggtttcagccaaagaattcggtggagtggagtttaggaaattggactaatggttgtgtgagaacagaaggattgaacttga |
4144799 |
T |
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| Q |
112 |
agtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagttcctgattttaatgagagatcagctgg |
211 |
Q |
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| T |
4144798 |
agtgtgagatggtgaagaatggatcaaatctagtgaaacaagatgcatttttggtgcatcataatatgaaacctcctgattttaatgagagatcagctgg |
4144699 |
T |
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| Q |
212 |
taatcaagataaatgtagaacagattgtttggcaaattgtacttgtttggcatatgcatatgatccttctata |
284 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4144698 |
taatcaagataaatgtggaacagattgtttggcaaattgtacttgtttggcatatgcatatgatccttctata |
4144626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 4163262 - 4162979
Alignment:
| Q |
1 |
gtgtaccaaatatttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggacagcagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
4163262 |
gtgtaccaaatatttgtagttgttttaaagggtttgagccaaagaatttggtggagtggagttcaaggaattggactaatggttgtgtgaggaaagaagg |
4163163 |
T |
|
| Q |
101 |
aatgaacttgaagtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagttcctgattttaatgag |
200 |
Q |
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| T |
4163162 |
aatgaacttgaagtgtgagatggtgaagaatggatcaagcgtagttaaacaagataaatttttggtgcatcccaatacgaaacctcctgattttgctgag |
4163063 |
T |
|
| Q |
201 |
agatcagctggtaatcaagataaatgtagaacagattgtttggcaaattgtacttgtttggcatatgcatatgatccttctata |
284 |
Q |
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||||||| || || || |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| |
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| T |
4163062 |
agatcagatgttagtcgagataagtgtagaacagattgtttggcaaattgttcttgtttggcttatgcatatgatccttttata |
4162979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 4152901 - 4152625
Alignment:
| Q |
12 |
atttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggacagcaggaatgaacttga |
111 |
Q |
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||||||||||||||| | ||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||||||| || |||||||||||| | |
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| T |
4152901 |
atttgtagttgttttgatgggtttgagccaaagaattctgtggaatggagtttaggcaattggactaatggttgtgtgaggaaagaaggaatgaacttaa |
4152802 |
T |
|
| Q |
112 |
agtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagttcctgattttaatgagagatca---gc |
208 |
Q |
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||||||||||| |||||| ||||||| | | ||||||||||||| ||| |||| ||| ||||||||| |||||||||||||| |||| || |
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| T |
4152801 |
agtgtgagatggtgaagaatggatcaagtatagttaaacaagatggatttaaggtgtatcataatatgaaacctcctgattttaatgtgagaacaaataa |
4152702 |
T |
|
| Q |
209 |
tggtaatcaagataaatgtagaacagattgtttggcaaattgtacttgtttggcatatgcatatgatccttctatat |
285 |
Q |
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|| | |||||||||| ||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4152701 |
tgctgatcaagataagtgtggagcagattgtttggcaaattgttcttgtttggcatatgcatatgatccttctatat |
4152625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 4123551 - 4123278
Alignment:
| Q |
12 |
atttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggacagcaggaatgaacttga |
111 |
Q |
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||||||||||||||| | ||||||||| ||||||||| ||||||||||||| | | ||||||||||||||||||||||||| || ||| ||||||||| |
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| T |
4123551 |
atttgtagttgttttgatgggtttgaggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaacttga |
4123452 |
T |
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| Q |
112 |
agtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagttcctgattttaatgagagatcagctgg |
211 |
Q |
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||||||||||| |||||| ||||||| || | |||| |||||||| ||| |||| ||| ||||||||||||||||||||| |||||||| | || |
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| T |
4123451 |
agtgtgagatggtgaagaatggatcaactgtagttaagcaagatggatttaaggtgtatcataatatgaaagttcctgattttgctgagagattaaatgt |
4123352 |
T |
|
| Q |
212 |
taatcaagataaatgtagaacagattgtttggcaaattgtacttgtttggcatatgcatatgatccttctatat |
285 |
Q |
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| || |||||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4123351 |
tgatatagataagtgtggagaagattgtttggcaaattgttcttgtttggcatatgcatatgatccttctatat |
4123278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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