View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_53 (Length: 295)
Name: NF19748_low_53
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 7089259 - 7088989
Alignment:
| Q |
10 |
gcacagaatttttaatatcattggttactgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattt |
109 |
Q |
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| T |
7089259 |
gcacagaatttttaatatcattggtttctgatgatttctctagagctaacaatacttacattggaaagttaaggttagtctcctcaatcaatccacattt |
7089160 |
T |
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| Q |
110 |
tttcatggttaatgcattattattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcat |
209 |
Q |
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| T |
7089159 |
tttcatggttaatgcattattattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcat |
7089060 |
T |
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| Q |
210 |
cctccacatgtgtctttgcttccatcgagttgcaagttgcaacaaaaggttcatatgaagcaagtacttcc |
280 |
Q |
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| T |
7089059 |
cctccacatgtgtcttcgcttccatcgagttgcaagttgcaacaaaaggttcatatgaagcaagtacttcc |
7088989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 7668593 - 7668328
Alignment:
| Q |
18 |
tttttaatatcattggttactgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattttttcatgg |
117 |
Q |
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| T |
7668593 |
tttttaatatcattggtttctgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcccatatcaattcacatcttttaa-gg |
7668495 |
T |
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| Q |
118 |
ttaatgcattattattctactgtttacttgatcattaagcaatg-aacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccac |
216 |
Q |
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| T |
7668494 |
ctaatgcattattattctagtgcttagttgatcattaagcaaaataacaggtctaattttctcggcaccaagttcacgatcttggatggtcatcctccac |
7668395 |
T |
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| Q |
217 |
atgtgtctttgcttccatcgagttgcaagttgcaacaaaaggttc--atatgaagcaagtacttcct |
281 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| |
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| T |
7668394 |
atgtttcttcgcttccatcgagttgcaagttgcaacaaaaggtccatatatgaagcaagtatttcct |
7668328 |
T |
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