View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_55 (Length: 293)
Name: NF19748_low_55
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 38997067 - 38997346
Alignment:
| Q |
1 |
caatattcatactgatactactactaacttactnnnnnnnnn-gggacgcttggccatatcctgaattcagtggaaatgagctcactggcaccatattct |
99 |
Q |
| |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38997067 |
caatattcatactgatactactactaccttactaaaaaaaaaagggacgcttggccatatcctgaattcagtggaaatgagctcactggcaccatattct |
38997166 |
T |
|
| Q |
100 |
gttgggacttgcctcacctccttgcagccccaaaaacttaaccatttgaattcactaacaacaacatgttctgtccaagtccaacaacaaccaccagttc |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38997167 |
gttgggacttgcctcacctccttgcagccccaaaaacttaaccatttgaattcactaacaacaacatgttctgtccaagtccaacaacaaccaccagttc |
38997266 |
T |
|
| Q |
200 |
ttgtacaaaaggataatcaattgaaaagaagagaagcaataggcctctccttgagttttggtcttctacattctttattg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38997267 |
ttgtacaaaaggataatcaattgaaaagaagagaagcaataggcctctccttgagttttggtcttctacattctttattg |
38997346 |
T |
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