View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_57 (Length: 285)
Name: NF19748_low_57
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 19369377 - 19369113
Alignment:
| Q |
7 |
agaaccacaacctctgtgttactgaattaattcattcgcttaatttaatatggcaattttatatgtttgtgttttacttacaactagacctaactagcaa |
106 |
Q |
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| T |
19369377 |
agaaccacaacctctgt--tactgaattaattcattcgcttaatttaatatggcaattttatatgtttgtgttttacttacaactagacctaactagcaa |
19369280 |
T |
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| Q |
107 |
gccggcttctcaaatcaagagtagaagcatgtcgccgcgccgtgccagggggagttagcacaacattaactttgcgtagtttagtttgtcccatcttgac |
206 |
Q |
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| T |
19369279 |
gccggcttctcaaatcaagagtagaagcaagtcgccgcgccgtgccagggggagttagcacaacattaactttgcgtagtttagtttgtcccatcttgac |
19369180 |
T |
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| Q |
207 |
ctagccatgagaaattggttgatcaaacaggccagccaagaaatgttggacgttataccccacaccc |
273 |
Q |
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| T |
19369179 |
ctagccatgagaaattggttgatcaaacaggccagccaagaaatcttggacgttataccccacaccc |
19369113 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 23225365 - 23225308
Alignment:
| Q |
28 |
ctgaattaattcattcgcttaatttaatatggcaattttatatgtttgtgttttactt |
85 |
Q |
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| T |
23225365 |
ctgaattaattcatttgcttaatttaatttgtcgattttatttgcttgtgttttactt |
23225308 |
T |
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