View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19748_low_58 (Length: 284)
Name: NF19748_low_58
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_58 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 41391 - 41137
Alignment:
| Q |
15 |
caaaggcacccacagtgtaactattttatctgcaaaatgtgccttttgctatacaatttggttatcaaacgtgtatttccttcgttagtttggtcatcaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41391 |
caaaggcacccacagtgtaactattttatctgcaaaatgtgccttttgctatacaatttggttatcaaacgtgtatttccttcgttagtttggtcatcaa |
41292 |
T |
|
| Q |
115 |
atatgtcttcagtcagtcagtccatgaaatggccctcaactaaaatatgtctttcatgttaatatcttaaatcaaaattagaaaataaacagtcaattta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41291 |
atatgtcttcagtcagtcagtccatgaaatggccctcaactaaaatatgtctttcatgttaatatcttaaatcaaaattagaaaataaacagtcaattta |
41192 |
T |
|
| Q |
215 |
atcccaaaacaaaactatcaatttttcgtcaatttagtctctaaaccgttaaaat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41191 |
atcccaaaacaaaactatcaatttttcgtcaatttagtctctaaactgttaaaat |
41137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University