View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_66 (Length: 263)
Name: NF19748_low_66
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 51216361 - 51216594
Alignment:
| Q |
20 |
aacaggccaagaatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggaca |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51216361 |
aacaggccaagaatattactactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggaca |
51216460 |
T |
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| Q |
120 |
gaaccaccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51216461 |
gaaccaccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
51216560 |
T |
|
| Q |
220 |
catattgatcaacaagggtggcacctatgcttct |
253 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
51216561 |
catattgatcaacaagggtggcacctatgcttct |
51216594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 29934017 - 29933829
Alignment:
| Q |
31 |
aatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccatt |
130 |
Q |
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|||| ||||||||||||| || || ||||| |||||||| ||||||||||||||||| |||||||||||||| | || | ||||||| |||| || || |
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| T |
29934017 |
aatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtgcaagatgcacttgactgtgttatggtggaccgaacaacaata |
29933918 |
T |
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| Q |
131 |
gtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
219 |
Q |
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| T |
29933917 |
atagtagctcataggttatcgactataaagggtgcagatttaattgcagtcgttaagaatggtgtgatatcagagaaaggaaaacatga |
29933829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 51149144 - 51149337
Alignment:
| Q |
26 |
ccaagaatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaacca |
125 |
Q |
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|||| |||| ||||||||||||| || || ||||| |||||||| ||||||||||||||||| |||||||||||||| | || | |||||| |||| | |
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| T |
51149144 |
ccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtacaagatgcacttgaccgtgtaatggtggagcgaacga |
51149243 |
T |
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| Q |
126 |
ccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
219 |
Q |
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| || | ||||| ||||| ||||| || || || |||||| ||| ||| ||||| ||||| ||||| ||||| | |||||||||||||||||| |
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| T |
51149244 |
caataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatga |
51149337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 51160007 - 51160200
Alignment:
| Q |
26 |
ccaagaatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaacca |
125 |
Q |
| |
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|||| |||| ||||||||||||| || || ||||| |||||||| ||||||||||||||||| |||||||||||||| | || | |||||| |||| | |
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| T |
51160007 |
ccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtacaagatgcacttgaccgtgtaatggtggagcgaacga |
51160106 |
T |
|
| Q |
126 |
ccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
219 |
Q |
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| || | ||||| ||||| ||||| || || || |||||| ||| ||| ||||| ||||| ||||| ||||| | |||||||||||||||||| |
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| T |
51160107 |
caataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatga |
51160200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 51202706 - 51202899
Alignment:
| Q |
26 |
ccaagaatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaacca |
125 |
Q |
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|||| |||| ||||||||||||| || || ||||| |||||||| |||||||| || ||||| |||||||||||||| | || | |||||| |||| | |
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| T |
51202706 |
ccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttgaccgtgtaatggtggagcgaacga |
51202805 |
T |
|
| Q |
126 |
ccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
219 |
Q |
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| || | ||||| ||||| ||||| || || || |||||| ||| ||| ||||| ||||| ||||| ||||| | |||||||||||||||||| |
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| T |
51202806 |
caataatagtggcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatga |
51202899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 26 - 253
Target Start/End: Complemental strand, 49734135 - 49733908
Alignment:
| Q |
26 |
ccaagaatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaacca |
125 |
Q |
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|
|||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
49734135 |
ccaagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttgatagattgagggtggacagaacca |
49734036 |
T |
|
| Q |
126 |
ccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatatt |
225 |
Q |
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|||||||||||||||||||| |||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | || |
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| T |
49734035 |
ccattgtggtggctcatagactatctaccataaagggttcaaattcaattgcagtggttaaaaatggagtgattgaagagaaaggaaagcatgaaacgtt |
49733936 |
T |
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| Q |
226 |
gatcaacaagggtggcacctatgcttct |
253 |
Q |
| |
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| |||||||| |||| |||||||||||| |
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| T |
49733935 |
gctcaacaagagtggtacctatgcttct |
49733908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 36289037 - 36289245
Alignment:
| Q |
26 |
ccaagaatattattactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaacca |
125 |
Q |
| |
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|||| ||||||| |||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||| ||| |||| | ||| ||| |||||| |
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| T |
36289037 |
ccaaaaatattactactagatgaagccaccagtgcccttgatgctgagtccgaaaaagtagttcaggatgcactggatcgagttatggttgaccgaacca |
36289136 |
T |
|
| Q |
126 |
ccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatatt |
225 |
Q |
| |
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| ||| | ||||| || || ||||| || || ||||||||| ||| ||||||||| || || ||||| || ||| |||||||||||| ||||| | ||| |
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| T |
36289137 |
caattatagtggcacacaggttatccactattaagggtgcagatttaattgcagtggtgaagaatggggtcattacagagaaaggaaatcatgaaacatt |
36289236 |
T |
|
| Q |
226 |
gatcaacaa |
234 |
Q |
| |
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||||||||| |
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| T |
36289237 |
gatcaacaa |
36289245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 42691605 - 42691545
Alignment:
| Q |
44 |
gatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgata |
104 |
Q |
| |
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||||||||||| |||||||||||| ||||||| ||||| |||||||||| |||||||||| |
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| T |
42691605 |
gatgaggccactagtgcccttgattcagagtcagaaaagctggttcaagaagcacttgata |
42691545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 49736890 - 49736838
Alignment:
| Q |
41 |
ctagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaaga |
93 |
Q |
| |
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|||||||| || |||||||||||||| |||||||| |||| |||||| ||||| |
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| T |
49736890 |
ctagatgaagcaacaagtgcccttgacgcagagtcggaaagagtggtacaaga |
49736838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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