View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19748_low_7 (Length: 599)

Name: NF19748_low_7
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19748_low_7
NF19748_low_7
[»] chr4 (9 HSPs)
chr4 (8-575)||(11787317-11787885)
chr4 (8-575)||(11799484-11800052)
chr4 (8-111)||(11783951-11784054)
chr4 (8-108)||(11697767-11697867)
chr4 (8-100)||(11707483-11707575)
chr4 (9-100)||(11676260-11676351)
chr4 (9-100)||(11684539-11684630)
chr4 (495-579)||(3369847-3369932)
chr4 (498-567)||(30626587-30626656)
[»] scaffold1088 (1 HSPs)
scaffold1088 (498-579)||(2099-2180)
[»] chr7 (5 HSPs)
chr7 (485-579)||(35793365-35793460)
chr7 (497-573)||(27756267-27756344)
chr7 (498-577)||(24432626-24432705)
chr7 (547-579)||(967646-967678)
chr7 (496-579)||(35828640-35828724)
[»] chr1 (4 HSPs)
chr1 (497-575)||(10532490-10532569)
chr1 (497-573)||(84255-84331)
chr1 (549-579)||(13575131-13575161)
chr1 (495-575)||(39384560-39384641)
[»] scaffold0294 (1 HSPs)
scaffold0294 (8-100)||(19547-19639)
[»] scaffold0286 (1 HSPs)
scaffold0286 (496-575)||(17639-17719)
[»] chr6 (6 HSPs)
chr6 (496-575)||(2164690-2164770)
chr6 (496-575)||(2176323-2176403)
chr6 (523-575)||(1614843-1614895)
chr6 (495-575)||(12101690-12101769)
chr6 (492-564)||(15139569-15139642)
chr6 (495-573)||(13398385-13398460)
[»] chr8 (2 HSPs)
chr8 (548-579)||(18929356-18929387)
chr8 (514-572)||(29219359-29219417)
[»] chr3 (2 HSPs)
chr3 (501-579)||(3354755-3354834)
chr3 (529-575)||(33687639-33687685)
[»] chr2 (3 HSPs)
chr2 (497-579)||(13025532-13025614)
chr2 (486-579)||(14289257-14289350)
chr2 (498-573)||(23993894-23993970)


Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Complemental strand, 11787885 - 11787317
Alignment:
Q  8 gagtgagatgaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctgcaattca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11787885 gagtgagatgaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggcagcatagccgacaacgttaacaagcctagtccctgcaattca 11787786  T
Q  108 ttaaaacaatgagtcaatgataacttgtgactggttttggatatctgaatgtcttcccactacttccatgtctgttttgatgaatggaagacttgcaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11787785 ttaaaacaatgagtcaatgataacttgtgactggttttggatatctgaatgtcttcccactacttccatgtctgttttgatgaatggaagacttgcaaaa 11787686  T
Q  208 gagtttccggcgagaaggggaatcagacaaggatagccgttatccagtttggtattgatgaagtgactatgccacacttacaacattgcaacgacacaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  11787685 gagtttccggcgagaaggggaatcagacaaggatagccgttatccagtttggtatagatgaagtgactataccacacttacaacattgcaacgacacaaa 11787586  T
Q  308 gattgtggtgaagaaaagttgaaaaaacaggtgat--taaggcaattttgcaagtgtttgaattagtgtctagattgatggtaaactttcgtaaaaacgt 405  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11787585 gattgtggtgaagaaaagttggaaaaacaggtgattataaggcaattttgcaagtgtttgaattagtgtctagattgatgggaaactttcgtaaaaacgt 11787486  T
Q  406 tctaatgggtgtaaatatacatcatacatcgaaagtagaggcaacatgtgtgataaatttcaaagttggtagtttgtcattaaaatattggcttaatagc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11787485 tctaatgggtgtaaatatacatcatacatcgaaagtagaggcaacatgtgtgataaatttcaaagttggtagtttgtcatttaaatattggcttaatagc 11787386  T
Q  506 agttttgtcccctga-ggattaggaagttacgattttagctttctaacaaaataaaatacaatccagcccc 575  Q
    |||||||   ||| | | || || ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  11787385 agttttg--gcctaatgtatcagcaagttacgattttggcttcctaacaaaataaaatacaatccagcccc 11787317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Complemental strand, 11800052 - 11799484
Alignment:
Q  8 gagtgagatgaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctgcaattca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11800052 gagtgagatgaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggcagcatagccgacaacgttaacaagcctagtccctgcaattca 11799953  T
Q  108 ttaaaacaatgagtcaatgataacttgtgactggttttggatatctgaatgtcttcccactacttccatgtctgttttgatgaatggaagacttgcaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11799952 ttaaaacaatgagtcaatgataacttgtgactggttttggatatctgaatgtcttcccactacttccatgtctgttttgatgaatggaagacttgcaaaa 11799853  T
Q  208 gagtttccggcgagaaggggaatcagacaaggatagccgttatccagtttggtattgatgaagtgactatgccacacttacaacattgcaacgacacaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  11799852 gagtttccggcgagaaggggaatcagacaaggatagccgttatccagtttggtatagatgaagtgactataccacacttacaacattgcaacgacacaaa 11799753  T
Q  308 gattgtggtgaagaaaagttgaaaaaacaggtgat--taaggcaattttgcaagtgtttgaattagtgtctagattgatggtaaactttcgtaaaaacgt 405  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11799752 gattgtggtgaagaaaagttggaaaaacaggtgattataaggcaattttgcaagtgtttgaattagtgtctagattgatgggaaactttcgtaaaaacgt 11799653  T
Q  406 tctaatgggtgtaaatatacatcatacatcgaaagtagaggcaacatgtgtgataaatttcaaagttggtagtttgtcattaaaatattggcttaatagc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11799652 tctaatgggtgtaaatatacatcatacatcgaaagtagaggcaacatgtgtgataaatttcaaagttggtagtttgtcatttaaatattggcttaatagc 11799553  T
Q  506 agttttgtcccctga-ggattaggaagttacgattttagctttctaacaaaataaaatacaatccagcccc 575  Q
    |||||||   ||| | | || || ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  11799552 agttttg--gcctaatgtatcagcaagttacgattttggcttcctaacaaaataaaatacaatccagcccc 11799484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 11784054 - 11783951
Alignment:
Q  8 gagtgagatgaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctgcaattca 107  Q
    |||||||| ||||||||| || |||||||||||||||||| ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||    
T  11784054 gagtgagaagaagaataacattacttgtgactgaggagaataaattgtaatggaaggcagcatagccgacaatgttaacaagcctagtccctgcaaatca 11783955  T
Q  108 ttaa 111  Q
    ||||    
T  11783954 ttaa 11783951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 11697867 - 11697767
Alignment:
Q  8 gagtgagatgaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctgcaattca 107  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| ||||||  |||||||||||||| || || |||||||||||||||||||| ||||||    
T  11697867 gagtgagatgaagaataagattacttgtgattgagtagaacaagatgtgagtgaaggaagcatagctgataatgttaacaagcctagtccctgtaattca 11697768  T
Q  108 t 108  Q
    |    
T  11697767 t 11697767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 11707575 - 11707483
Alignment:
Q  8 gagtgagatgaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctg 100  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||  ||||| |||| ||| || || ||||||||||||||||||||    
T  11707575 gagtgagatgaagaataagattacttgtgattgaggagaacaaaatgtgagtgaagggagcaaagctgataatgttaacaagcctagtccctg 11707483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 11676351 - 11676260
Alignment:
Q  9 agtgagatgaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctg 100  Q
    ||||||||||| |||||||| |||||||||| |||||||||  ||||||  |||||||||||||| || || ||||||||||||||||||||    
T  11676351 agtgagatgaaaaataagattacttgtgactcaggagaacaggatgtgagagaaggaagcatagctgataatgttaacaagcctagtccctg 11676260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 11684630 - 11684539
Alignment:
Q  9 agtgagatgaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctg 100  Q
    ||||||||||| |||||||| |||||||||| |||||||||  ||||||  |||||||||||||| || || ||||||||||||||||||||    
T  11684630 agtgagatgaaaaataagattacttgtgactcaggagaacaggatgtgagagaaggaagcatagctgataatgttaacaagcctagtccctg 11684539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 579
Target Start/End: Original strand, 3369847 - 3369932
Alignment:
Q  495 ggcttaatagcagtttt-gtcccctgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagccccttaa 579  Q
    ||||||||| ||||||| | ||||| || || | |||||| ||||||| ||   |||||||||||||||||||| |||||||||||    
T  3369847 ggcttaatatcagtttttgccccctaagtatcaagaagttgcgattttggccccctaacaaaataaaatacaattcagccccttaa 3369932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 567
Target Start/End: Original strand, 30626587 - 30626656
Alignment:
Q  498 ttaatagcagttttgtcccctgaggattaggaagttacgattttagctttctaacaaaataaaatacaat 567  Q
    ||||||||||||||| ||||| || || ||||| || ||||||| || | ||||||||| ||||||||||    
T  30626587 ttaatagcagttttggcccctaagtatcaggaaattgcgattttggcctcctaacaaaagaaaatacaat 30626656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1088 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 498 - 579
Target Start/End: Complemental strand, 2180 - 2099
Alignment:
Q  498 ttaatagcagttttgtcccctgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagccccttaa 579  Q
    |||||||||||||||||| || || ||||| ||||| ||||||| ||   |||||||||||||||||||| |||||||||||    
T  2180 ttaatagcagttttgtcctctaagcattagaaagttgcgattttggccccctaacaaaataaaatacaattcagccccttaa 2099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 579
Target Start/End: Original strand, 35793365 - 35793460
Alignment:
Q  485 ttaaaatattggcttaatagcagttttgtcccc-tgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagccccttaa 579  Q
    ||||||| |||||||||||||||||||| |||| | |   |||||||||| |||||||||    |||||||||||||||||||| |||||||||||    
T  35793365 ttaaaattttggcttaatagcagttttggccccctaaattttaggaagttgcgattttaggcccctaacaaaataaaatacaattcagccccttaa 35793460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 573
Target Start/End: Original strand, 27756267 - 27756344
Alignment:
Q  497 cttaatagcagttttgtcccctgagg-attaggaagttacgattttagctttctaacaaaataaaatacaatccagcc 573  Q
    |||||||||||||||| ||||| | | |||||| |||| ||||||| ||   ||||||||||||||||||||||||||    
T  27756267 cttaatagcagttttggccccttaagtattaggtagttgcgattttggccccctaacaaaataaaatacaatccagcc 27756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 577
Target Start/End: Complemental strand, 24432705 - 24432626
Alignment:
Q  498 ttaatagcagttttgtcccctgagg-attaggaagttacgattttagctttctaacaaaataaaatacaatccagcccctt 577  Q
    ||||||||||||||| ||||| | | ||||||| ||| ||||||| |||  ||||||||||||||||||||| ||||||||    
T  24432705 ttaatagcagttttggccccttaagtattagga-gttgcgattttggctcactaacaaaataaaatacaatctagcccctt 24432626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 547 - 579
Target Start/End: Complemental strand, 967678 - 967646
Alignment:
Q  547 tctaacaaaataaaatacaatccagccccttaa 579  Q
    ||||||||||||||||||||| |||||||||||    
T  967678 tctaacaaaataaaatacaattcagccccttaa 967646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 579
Target Start/End: Complemental strand, 35828724 - 35828640
Alignment:
Q  496 gcttaatagcagttttgtcccc-tgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagccccttaa 579  Q
    ||||||||| ||||||| |||| | || |||| ||| ||| ||||||  | | |||| |||||||||||||||||||||||||||    
T  35828724 gcttaatagtagttttgaccccataagtattatgaaattatgatttttacctcctaataaaataaaatacaatccagccccttaa 35828640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 497 - 575
Target Start/End: Complemental strand, 10532569 - 10532490
Alignment:
Q  497 cttaatagcagttttgtcccctgagg-attaggaagttacgattttagctttctaacaaaataaaatacaatccagcccc 575  Q
    |||||||||||||||| ||||  | | ||||||||||||||||||| ||  || ||||||||||||||||||||||||||    
T  10532569 cttaatagcagttttggccccctatgtattaggaagttacgattttggccctccaacaaaataaaatacaatccagcccc 10532490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 573
Target Start/End: Complemental strand, 84331 - 84255
Alignment:
Q  497 cttaatagcagttttgtcccctgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagcc 573  Q
    ||||||||||||||||   ||| || || |||||||| | ||||| ||| |||||||||||||||||||||||||||    
T  84331 cttaatagcagttttgcatcctaagtatcaggaagttgcaattttggctctctaacaaaataaaatacaatccagcc 84255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 549 - 579
Target Start/End: Complemental strand, 13575161 - 13575131
Alignment:
Q  549 taacaaaataaaatacaatccagccccttaa 579  Q
    |||||||||||||||||||||||||||||||    
T  13575161 taacaaaataaaatacaatccagccccttaa 13575131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 575
Target Start/End: Complemental strand, 39384641 - 39384560
Alignment:
Q  495 ggcttaatagcagttttg-tcccctgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagcccc 575  Q
    ||||||| || ||||||| |||||| || || |||||||| ||| ||| || | |||| |||||||||||||||||||||||    
T  39384641 ggcttaacagtagttttggtcccctaagtatcaggaagttgcgaatttggcctcctaataaaataaaatacaatccagcccc 39384560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 19639 - 19547
Alignment:
Q  8 gagtgagatgaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctg 100  Q
    |||||| |||||||||||||| |||||||| |||| ||||||| ||| ||  |||||||| ||||  || |  ||||||||||||||||||||    
T  19639 gagtgaaatgaagaataagattacttgtgattgagtagaacaagatgcgagtgaaggaagaatagttgatagtgttaacaagcctagtccctg 19547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 575
Target Start/End: Original strand, 17639 - 17719
Alignment:
Q  496 gcttaatagcagttttgtcccc-tgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagcccc 575  Q
    ||||||||||||||||| |||| |||| || |||||||| |||||||  |   ||||||||||||||||||||||||||||    
T  17639 gcttaatagcagttttggccccctgagtatcaggaagttgcgattttgacaccctaacaaaataaaatacaatccagcccc 17719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 575
Target Start/End: Complemental strand, 2164770 - 2164690
Alignment:
Q  496 gcttaatagcagttttgtcccc-tgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagcccc 575  Q
    ||||||||||||||||| |||| |||| || |||||||| |||||||  |   ||||||||||||||||||||||||||||    
T  2164770 gcttaatagcagttttggccccctgagtatcaggaagttgcgattttgacaccctaacaaaataaaatacaatccagcccc 2164690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 575
Target Start/End: Complemental strand, 2176403 - 2176323
Alignment:
Q  496 gcttaatagcagttttgtcccc-tgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagcccc 575  Q
    ||||||||||||||||| |||| |||| || |||||||| |||||||  |   ||||||||||||||||||||||||||||    
T  2176403 gcttaatagcagttttggccccctgagtatcaggaagttgcgattttgacaccctaacaaaataaaatacaatccagcccc 2176323  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 1614843 - 1614895
Alignment:
Q  523 attaggaagttacgattttagctttctaacaaaataaaatacaatccagcccc 575  Q
    ||||||||||| ||||| | || | ||||||||||||||||||||||||||||    
T  1614843 attaggaagttgcgattgtggcctcctaacaaaataaaatacaatccagcccc 1614895  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 575
Target Start/End: Complemental strand, 12101769 - 12101690
Alignment:
Q  495 ggcttaatagcagttttgtcccctgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagcccc 575  Q
    |||||||||||||||| ||||| | || || || |||||  |||||| || | ||||||||||||||||||||||||||||    
T  12101769 ggcttaatagcagttt-gtcccttaagtatcagaaagttgtgattttggcctcctaacaaaataaaatacaatccagcccc 12101690  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 564
Target Start/End: Original strand, 15139569 - 15139642
Alignment:
Q  492 attggcttaatagcagttttgtcc-cctgaggattaggaagttacgattttagctttctaacaaaataaaatac 564  Q
    ||||||||||||||||||||| || ||| || | ||||||||| ||||||| ||  | ||||||||||||||||    
T  15139569 attggcttaatagcagttttgacctcctaagtactaggaagttgcgatttttgccctttaacaaaataaaatac 15139642  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 573
Target Start/End: Original strand, 13398385 - 13398460
Alignment:
Q  495 ggcttaatagcagttttgtcccctgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagcc 573  Q
    ||||||||| |||||||||||||| |  || | |||||| ||||||| ||    |||||||||||||||||||||||||    
T  13398385 ggcttaataacagttttgtcccctaaatatcaagaagttgcgattttggc---ataacaaaataaaatacaatccagcc 13398460  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 579
Target Start/End: Original strand, 18929356 - 18929387
Alignment:
Q  548 ctaacaaaataaaatacaatccagccccttaa 579  Q
    ||||||||||||||||||||||||||||||||    
T  18929356 ctaacaaaataaaatacaatccagccccttaa 18929387  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 572
Target Start/End: Complemental strand, 29219417 - 29219359
Alignment:
Q  514 cccctgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagc 572  Q
    ||||| || ||||||||||| ||||||||||   |||||||||||| ||||||||||||    
T  29219417 cccctaagtattaggaagttgcgattttagccccctaacaaaataatatacaatccagc 29219359  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 579
Target Start/End: Original strand, 3354755 - 3354834
Alignment:
Q  501 atagcagttttgtcccc-tgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagccccttaa 579  Q
    |||||||||||| |||| | || || ||||| || ||||||| || | |||| |||||||||||||||||||||||||||    
T  3354755 atagcagttttggccccctaagtatcaggaaattgcgattttggcctcctaagaaaataaaatacaatccagccccttaa 3354834  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 575
Target Start/End: Original strand, 33687639 - 33687685
Alignment:
Q  529 aagttacgattttagctttctaacaaaataaaatacaatccagcccc 575  Q
    ||||| ||||||||||   ||||||||||||||||||||||||||||    
T  33687639 aagttgcgattttagccccctaacaaaataaaatacaatccagcccc 33687685  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 579
Target Start/End: Original strand, 13025532 - 13025614
Alignment:
Q  497 cttaatagcagttttgtcccctgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagccccttaa 579  Q
    ||||||||||||||||  |||| |  |||||||||||  ||||||  || ||||||| ||||||||||||| ||| |||||||    
T  13025532 cttaatagcagttttgatccctaaatattaggaagttgtgattttgactatctaacagaataaaatacaattcagtcccttaa 13025614  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 579
Target Start/End: Original strand, 14289257 - 14289350
Alignment:
Q  486 taaaatattggcttaatagcagttttgtcccctgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagccccttaa 579  Q
    |||||||  |||||||||||||||||  | ||| || || | |||||| ||||||| ||   ||||||||||||||||||||  ||||||||||    
T  14289257 taaaataaaggcttaatagcagtttttcctcctaagtatcatgaagttgcgattttggccccctaacaaaataaaatacaatttagccccttaa 14289350  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 573
Target Start/End: Complemental strand, 23993970 - 23993894
Alignment:
Q  498 ttaatagcagttttgtc-ccctgaggattaggaagttacgattttagctttctaacaaaataaaatacaatccagcc 573  Q
    ||||||||||||||| | |||| || |||| |||||| | ||||| ||   ||||||||||||||||||||||||||    
T  23993970 ttaatagcagttttggctccctaagtattaagaagttgcaattttggccccctaacaaaataaaatacaatccagcc 23993894  T

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