View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_71 (Length: 251)
Name: NF19748_low_71
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39355338 - 39355575
Alignment:
| Q |
1 |
catctcatctccattaccacaacaaggacaagtcttctgacaggaggagaaccaaacaatttatttagagtagtaaggcattttagaattaatgacgttt |
100 |
Q |
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| T |
39355338 |
catctcatctgcattactacaacaaggacaagtcttctgacagga---gaaccaaacaatttatttagagtagtaaggcattttagaattaatgacgttt |
39355434 |
T |
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| Q |
101 |
tttcaaataaaaacgcccacccttacacttggaaactttcttctcattaatttaggagtcacaattgcttaggagtgtggtcagtttgattagtgggcca |
200 |
Q |
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| T |
39355435 |
tttcaaataaaaacgcccacccttacacttggaaactttcttctcattaatttaggagtcacaattgcttaggagtgtggtcagtttgattagtgggcca |
39355534 |
T |
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| Q |
201 |
ggttcattacctaaatgaatttgattagttccttgcctttg |
241 |
Q |
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| T |
39355535 |
ggttcattacctaaatgaatttgattagttccttgcctttg |
39355575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 44465322 - 44465110
Alignment:
| Q |
27 |
gacaagtcttctgacaggaggagaacc-aaacaatttatttagagtagtaaggcattttagaattaatgacgttttttcaaataaaaacgcccaccctta |
125 |
Q |
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|||||||| ||||||| |||||||| ||| ||||| |||||||||| ||||||||||| ||||||| || |||||||||||||||||| ||||| || |
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| T |
44465322 |
gacaagtcctctgaca---ggagaaccaaaaaaatttgtttagagtagcaaggcattttataattaatcacaatttttcaaataaaaacgcgcacccata |
44465226 |
T |
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| Q |
126 |
cacttggaaactttcttctcattaatttaggagtcacaattgcttaggagtgtggtcagtttgattagtgggccaggttcattacctaaatgaatttgat |
225 |
Q |
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||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || |||||| ||||||||||| |
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| T |
44465225 |
cacttagaaactttcttcatattaatttaggagtcacatttgcttaggagtgtggtcagtttaattagtgggccaggtgcaatacctagatgaatttgat |
44465126 |
T |
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| Q |
226 |
tagttccttgcctttg |
241 |
Q |
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||||| |||||||||| |
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| T |
44465125 |
tagtttcttgcctttg |
44465110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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