View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19748_low_77 (Length: 241)
Name: NF19748_low_77
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_77 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 8362784 - 8363015
Alignment:
| Q |
1 |
atatagtatttgcagccaatcttgagatggatatcaattcccacaccttataactttcttccaacacagaacaggagtctgcaaatcaccatcaacagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8362784 |
atatagtatttgcagccaatcttgagatggatatcaattcccacaccttataactttcttccaacatagaacaggagtctgcaaatcaccatcaacagtt |
8362883 |
T |
|
| Q |
101 |
aacggaaagtttaaaaatagttaaactggtnnnnnnnttcatcttttaagggaagactgtgtgtttcaaaacaaaagaagaggatattgtaatttacgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8362884 |
aacggaaagtttaaaaatagttaaactggtaaaaaaattcatcttttaagggaagactgtgtgtttcaaaacaaaagaagaggatattgtaatttacgga |
8362983 |
T |
|
| Q |
201 |
tctcttaaggatagttcttattttgatgatgt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8362984 |
tctcttaaggatagttcttattttgatgatgt |
8363015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University