View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_78 (Length: 240)
Name: NF19748_low_78
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 5910508 - 5910715
Alignment:
| Q |
17 |
agaagaagggttgcataaacaatcagaaagatggcaaaacagaagaaattgaatcggaccaccaaagttttggatggtgctctcttcaccagcaacttat |
116 |
Q |
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| T |
5910508 |
agaagaagggttgcataaacaatcagaaagatggcaaaacagaacaaattgaatcggaccaccaaagttttggatggtgctctcttcaccagcaacttat |
5910607 |
T |
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| Q |
117 |
taacatttgaaacatccatctttaaagtgcaatgttagctgaaataatagtgcctaaatggaggggactgcaaactatatatataaatgtgttactcttt |
216 |
Q |
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| T |
5910608 |
taacatttgaaacatccatctttaaagtgcaatgttagctgaaataatagtgcctaaatggaggggactgcaaactatatatgtaaatgtgttactcttt |
5910707 |
T |
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| Q |
217 |
catatatt |
224 |
Q |
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|||||||| |
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| T |
5910708 |
catatatt |
5910715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 5914894 - 5915082
Alignment:
| Q |
17 |
agaagaagggttgcataaacaatcagaaagatggcaaaacagaagaaattgaatcggaccaccaaagttttggatggtgctctcttcaccagcaacttat |
116 |
Q |
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||||||||||||||||||||||| |||||||||| || ||| || |||||||||| | | ||||| ||||||||||||| ||||||| |||||||| |
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| T |
5914894 |
agaagaagggttgcataaacaatgagaaagatggaaagacataacaaattgaatctcataatcaaagctttggatggtgctgtcttcac---caacttat |
5914990 |
T |
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| Q |
117 |
taacatttgaaacatccatctttaaagtgcaatgt--tagctgaaataatagtgcct-aaatggaggggactgcaaactatatatataaatg |
205 |
Q |
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| T |
5914991 |
gaagatttgaaacatccatctttaaagtgaaatgttataggagaaataacagtgcctaaaatggaggggactacacactatatatgtaaatg |
5915082 |
T |
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