View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19748_low_80 (Length: 238)
Name: NF19748_low_80
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19748_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 39524845 - 39525027
Alignment:
| Q |
21 |
acaccggcgacttaatcattgaccggagagacaacaatctctccgccaacactcccatctccgacgaatgcactttcaaactcgcccccgacatttcctt |
120 |
Q |
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| T |
39524845 |
acaccggcgacttaatcattgaccggagagacaacaatctctccgccaacactcccatctccgacgaatgcactttcaaactcgcccccgacatttcctt |
39524944 |
T |
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| Q |
121 |
tatcgatccaagcgacaggttcgttcgtttgttctcattccctaatttcaannnnnnnnattcactttccaaaaccccagaacc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
39524945 |
tatcgatccaagcgacaggttcgttcgtttgttctcattccttaatttcaa-cttttttattcactttccaaaaccccagaacc |
39525027 |
T |
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