View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19748_low_84 (Length: 213)

Name: NF19748_low_84
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19748_low_84
NF19748_low_84
[»] chr1 (4 HSPs)
chr1 (1-213)||(47759114-47759327)
chr1 (1-142)||(47712216-47712357)
chr1 (1-120)||(47744764-47744883)
chr1 (1-120)||(47716971-47717087)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 47759114 - 47759327
Alignment:
Q  1 cagaaaagttacttgtagcaacttgtaatgtctcaaagttgaattgcaatgactcagccatgtcaatatcatcattgtcgtcttcttcgatttcttcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47759114 cagaaaagttacttgtagcaacttgtaatgtctcaaagttgaattgcaatgactcagccatgtcaatatcatcattgtcgtcttcttcgatttcttcaaa 47759213  T
Q  101 aatgatacaaggcatgttagtaaagtaaaaatagaaaaatattggcttccattttctctctatttttgaattactacatctag-nnnnnnnatttgaatg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  47759214 aatgatacaaggcatgttagtaaagtaaaaatagaaaaatattggcttccattttctctctatttttgaattactacatctagttttttttatttgaatg 47759313  T
Q  200 caaaactttgttaa 213  Q
    ||||||||||||||    
T  47759314 caaaactttgttaa 47759327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 47712216 - 47712357
Alignment:
Q  1 cagaaaagttacttgtagcaacttgtaatgtctcaaagttgaattgcaatgactcagccatgtcaatatcatcattgtcgtcttcttcgatttcttcaaa 100  Q
    |||||||||| | |||||||||| |||||||||| ||||||||| | ||||||||||| || |||||||||||||| || | |||||| |||||||||||    
T  47712216 cagaaaagttccctgtagcaactcgtaatgtctcgaagttgaatagaaatgactcagcgatttcaatatcatcattatcattttcttctatttcttcaaa 47712315  T
Q  101 aatgatacaaggcatgttagtaaagtaaaaatagaaaaatat 142  Q
     |||||||||||||||||||||||||||||||||||||||||    
T  47712316 catgatacaaggcatgttagtaaagtaaaaatagaaaaatat 47712357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 47744764 - 47744883
Alignment:
Q  1 cagaaaagttacttgtagcaacttgtaatgtctcaaagttgaattgcaatgactcagccatgtcaatatcatcattgtcgtcttcttcgatttcttcaaa 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||  || |||||||||| ||| || |||||||  || ||||||||    
T  47744764 cagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgacgcagtgatttcaatatcattattttcatcttcttttatatcttcaaa 47744863  T
Q  101 aatgatacaaggcatgttag 120  Q
     ||  |||||||||||||||    
T  47744864 cattgtacaaggcatgttag 47744883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 47716971 - 47717087
Alignment:
Q  1 cagaaaagttacttgtagcaacttgtaatgtctcaaagttgaattgcaatgactcagccatgtcaatatcatcattgtcgtcttcttcgatttcttcaaa 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| || |||||||||| ||| || ||||||   || ||||||||    
T  47716971 cagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgactcagcgatttcaatatcattattatcatcttct---atatcttcaaa 47717067  T
Q  101 -aatgatacaaggcatgttag 120  Q
     |||| |||||||||||||||    
T  47717068 caatg-tacaaggcatgttag 47717087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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