View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19748_low_9 (Length: 587)

Name: NF19748_low_9
Description: NF19748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19748_low_9
NF19748_low_9
[»] chr4 (5 HSPs)
chr4 (18-571)||(51197778-51198330)
chr4 (22-355)||(51144123-51144458)
chr4 (22-362)||(51155267-51155605)
chr4 (166-365)||(29938475-29938674)
chr4 (182-360)||(51211466-51211644)
[»] chr1 (3 HSPs)
chr1 (253-355)||(38527181-38527283)
chr1 (253-355)||(38568482-38568584)
chr1 (466-507)||(22394043-22394084)
[»] chr3 (2 HSPs)
chr3 (202-356)||(49738534-49738688)
chr3 (173-354)||(36284664-36284848)
[»] chr2 (2 HSPs)
chr2 (288-344)||(5821155-5821211)
chr2 (299-355)||(5764242-5764298)
[»] chr5 (1 HSPs)
chr5 (469-503)||(14314748-14314782)


Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Original strand, 51197778 - 51198330
Alignment:
Q  18 gtgttcaggtgtccttgaaattcgtatacttggctgcgggtaccttcgttgcatctcttttacgtaagtacattagttcatctattagttcttacaatct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51197778 gtgttcaggtgtccttgaaattcgtatacttggctgcgggtaccttcgttgcgtctcttttacgtaagtacattagttcatctattagttcttacaatct 51197877  T
Q  118 aatgtattagtttggttcattacgatctaaaagaagccannnnnnnnatatgtattagagttgacttgctggatgattactggtgagagacaggctgcaa 217  Q
    ||||||||||||||||||||||| |||||||||||||||        |||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  51197878 aatgtattagtttggttcattacaatctaaaagaagccatttttt--atatgtatcagagttgacttgctggatgattaccggtgagagacaggctgcaa 51197975  T
Q  218 gaatcagaagcttatacctccaaactattttgaggcaagatgtgagtttctttgataaggaaactaatactggagaggttgttggaagaatgtctggtga 317  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51197976 gaatcagaagcttatacctccaaacaattttgaggcaagatgtgagtttctttgataaggaaactaatactggagaggttgttggaagaatgtctggtga 51198075  T
Q  318 tactgttcttattcaagatgccatgggtgagaaggtattaatgaacca-catacaagtcataannnnnnnnnnnnnnnnntttgtttttctatgagtacc 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||                 ||||||||||||||||||||    
T  51198076 tactgttcttattcaagatgccatgggtgagaaggtattaatgaaccaccatacaagtcataaatcatcatcatcatcattttgtttttctatgagtacc 51198175  T
Q  417 nnnnnnnnngaatttagcgaaaatcttgtttttgttataaaggattttatattggacatctggagcgtgaccctagtggcctgatagtggatggttcaac 516  Q
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  51198176 aaaaaaaaagaatttagcgaaaatcttgtttttgttataaaggattttatattggacatctggagcatgaccctagtggcctgatagtggatggttcaac 51198275  T
Q  517 ggtcacgctcatcagtcatcacttttggtgcatgggtaatatggtggctggtctg 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51198276 ggtcacgctcatcagtcatcacttttggtgcatgggtaatatggtggctggtctg 51198330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 22 - 355
Target Start/End: Original strand, 51144123 - 51144458
Alignment:
Q  22 tcaggtgtccttgaaattcgtatacttggctgcgggtaccttcgttgcatctcttttacgtaagtacattagttcatctattagttcttacaatctaatg 121  Q
    |||||||||  ||||||| ||||||||||||||||||||||| ||||| ||  |||| ||||||| ||||||||  ||  |||||||||||||||||||     
T  51144123 tcaggtgtctctgaaatttgtatacttggctgcgggtacctttgttgcgtcatttttgcgtaagtgcattagtttctcagttagttcttacaatctaat- 51144221  T
Q  122 tattagtttggttcattacgatctaaa---agaagccannnnnnnnatatgtattagagttgacttgctggatgattactggtgagagacaggctgcaag 218  Q
    |||| ||||||| ||||| || |||||   | |    |         ||| ||  ||| || |||||||||||||| || || |||||||||  ||||||    
T  51144222 tattggtttggtacattatgaactaaacttaaataaaatctgtttgctatataccagaattaacttgctggatgatcaccggggagagacagagtgcaag 51144321  T
Q  219 aatcagaagcttatacctccaaactattttgaggcaagatgtgagtttctttgataaggaaactaatactggagaggttgttggaagaatgtctggtgat 318  Q
    ||| ||| | ||||| ||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  51144322 aattagagggttatatcttaaaacaattttgaggcaagatgtgagtttctttgataaggaaactaatacgggagaggttgttggaagaatgtcaggtgat 51144421  T
Q  319 actgttcttattcaagatgccatgggtgagaaggtat 355  Q
    |||||||||||| | ||||||||||||||||||||||    
T  51144422 actgttcttattaaggatgccatgggtgagaaggtat 51144458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 22 - 362
Target Start/End: Original strand, 51155267 - 51155605
Alignment:
Q  22 tcaggtgtccttgaaattcgtatacttggctgcgggtaccttcgttgcatctcttttacgtaagtacattagttcatctattagttcttacaatctaatg 121  Q
    |||||||||  ||||||| ||||||||||||||||||||||| ||||| ||  |||| ||||||||||||||||  ||  ||||||||| |||||||||     
T  51155267 tcaggtgtctctgaaatttgtatacttggctgcgggtacctttgttgcgtcatttttgcgtaagtacattagtttctcagttagttcttccaatctaatt 51155366  T
Q  122 tattagtttggttcattacgatctaaaagaagccannnnnnnnatatgtattagagttgacttgctggatgattactggtgagagacaggctgcaagaat 221  Q
    |||| ||||||| ||||  || |||||| ||   |         ||||||  |||  | ||||| |||||||| || || |||||||||  |||||||||    
T  51155367 tattggtttggtacattctgaactaaaataaa--atctgtttgctatgtaccagaactaacttgttggatgatcaccggggagagacagagtgcaagaat 51155464  T
Q  222 cagaagcttatacctccaaactattttgaggcaagatgtgagtttctttgataaggaaactaatactggagaggttgttggaagaatgtctggtgatact 321  Q
     ||| | ||||||||  |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||     
T  51155465 tagagggttataccttaaaacaattttgaggcaagatgtgagcttctttgataaggaaactaatactggagaggttgttggaaggatgtcaggtgataca 51155564  T
Q  322 gttcttattcaagatgccatgggtgagaaggtattaatgaa 362  Q
     |||| ||| ||||||||||||| |||||||||| ||||||    
T  51155565 tttctaattaaagatgccatgggggagaaggtatcaatgaa 51155605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 166 - 365
Target Start/End: Complemental strand, 29938674 - 29938475
Alignment:
Q  166 tatgtattagagttgacttgctggatgattactggtgagagacaggctgcaagaatcagaagcttatacctccaaactattttgaggcaagatgtgagtt 265  Q
    |||||| ||||| | |||||||||||||| ||||| |||||||||  ||||||||| ||| ||||||||||  |||| |||||||||||||||||||| |    
T  29938674 tatgtactagaggtaacttgctggatgatcactggggagagacagagtgcaagaattagaggcttataccttaaaacaattttgaggcaagatgtgagct 29938575  T
Q  266 tctttgataaggaaactaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtattaatgaacca 365  Q
    | |||||||| |||||||| |||||||||||||||||||| ||| | ||||| |||||||||||| ||||||||||||| |||||||||| |||||||||    
T  29938574 tttttgataaagaaactaacactggagaggttgttggaaggatggcaggtgacactgttcttattaaagatgccatgggggagaaggtatcaatgaacca 29938475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 182 - 360
Target Start/End: Original strand, 51211466 - 51211644
Alignment:
Q  182 cttgctggatgattactggtgagagacaggctgcaagaatcagaagcttatacctccaaactattttgaggcaagatgtgagtttctttgataaggaaac 281  Q
    |||| |||||||| || || |||||||||||||||||||| ||    ||||||||| || | ||||| ||||||||| | ||||||||||| ||||||||    
T  51211466 cttgttggatgatcacaggggagagacaggctgcaagaataagggcattatacctcaaagcaattttaaggcaagatatcagtttctttgacaaggaaac 51211565  T
Q  282 taatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtattaatg 360  Q
     |||| ||| |||||||||||||||||||| |||||||| |||||||||||||| |||||||| || ||||||| ||||    
T  51211566 aaatagtggtgaggttgttggaagaatgtcaggtgatacagttcttattcaagaagccatgggagacaaggtatgaatg 51211644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 253 - 355
Target Start/End: Complemental strand, 38527283 - 38527181
Alignment:
Q  253 caagatgtgagtttctttgataaggaaactaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaagg 352  Q
    |||||||| | |||||||||||| ||||| || || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38527283 caagatgttactttctttgataaagaaacaaacacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaagg 38527184  T
Q  353 tat 355  Q
    |||    
T  38527183 tat 38527181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 253 - 355
Target Start/End: Complemental strand, 38568584 - 38568482
Alignment:
Q  253 caagatgtgagtttctttgataaggaaactaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaagg 352  Q
    |||||||| | |||||||||||| ||||| || || ||||| ||| | || |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38568584 caagatgttactttctttgataaagaaacaaacacaggagaagttatagggagaatgtcaggtgatactgttcttattcaagatgccatgggtgagaagg 38568485  T
Q  353 tat 355  Q
    |||    
T  38568484 tat 38568482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 507
Target Start/End: Complemental strand, 22394084 - 22394043
Alignment:
Q  466 tattggacatctggagcgtgaccctagtggcctgatagtgga 507  Q
    |||||||||||||||||||| ||| |||||||||| ||||||    
T  22394084 tattggacatctggagcgtgccccaagtggcctgaaagtgga 22394043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 202 - 356
Target Start/End: Complemental strand, 49738688 - 49738534
Alignment:
Q  202 gagagacaggctgcaagaatcagaagcttatacctccaaactattttgaggcaagatgtgagtttctttgataaggaaactaatactggagaggttgttg 301  Q
    |||||||| |||||||||||  |   |||||||||| || | ||||| ||||||||| | || |||||||| | |||||| || | ||  ||||||||||    
T  49738688 gagagacaagctgcaagaatacgggccttatacctcaaagcaattttaaggcaagatataagcttctttgacagggaaacaaacagtgttgaggttgttg 49738589  T
Q  302 gaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtatt 356  Q
    ||||||| || ||||| || ||||||||||||||||||||||| |||||||||||    
T  49738588 gaagaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtatt 49738534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 173 - 354
Target Start/End: Original strand, 36284664 - 36284848
Alignment:
Q  173 tagagttgacttgctggatgattactggtgagagacaggctgcaagaatcagaagcttatacctccaaactattttgaggcaagatgtgagtttctttga 272  Q
    ||||| || ||||||||||  | ||||| |||||||| ||  |||||||  |||  |||||||||  | | |||||||||||||||  ||| ||||||||    
T  36284664 tagaggtgtcttgctggatagtcactggggagagacaagcatcaagaattcgaaatttatacctcagagcaattttgaggcaagatacgagcttctttga 36284763  T
Q  273 taaggaa---actaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggta 354  Q
     | ||||   ||||||||||| |||||||||||||| |||||  |||| ||  |||||||||||||||| |||||||||||||||    
T  36284764 catggaagaaactaatactggcgaggttgttggaaggatgtcaagtgacacaattcttattcaagatgcaatgggtgagaaggta 36284848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 5821155 - 5821211
Alignment:
Q  288 tggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatggg 344  Q
    |||||||||| ||||||||||||||||||||||  |||| |||||||||||||||||    
T  5821155 tggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatggg 5821211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 5764242 - 5764298
Alignment:
Q  299 ttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 355  Q
    |||| |||||||||||||| ||  |||| ||||||||||||||||| || |||||||    
T  5764242 ttggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat 5764298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 503
Target Start/End: Complemental strand, 14314782 - 14314748
Alignment:
Q  469 tggacatctggagcgtgaccctagtggcctgatag 503  Q
    ||||||||||||| |||||||||||||||||||||    
T  14314782 tggacatctggagtgtgaccctagtggcctgatag 14314748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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