View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19749_low_2 (Length: 399)
Name: NF19749_low_2
Description: NF19749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19749_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 384
Target Start/End: Complemental strand, 35019922 - 35019550
Alignment:
| Q |
12 |
atgaacaggggcaattttacgcacggtacgccaataagaaccataaggactcaaaccaaacatggaaaagttataacccatgatttcaaaggctatagat |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35019922 |
atgaacagtggcaattttacgcacggtacgccaataagaaccataaggactcaaaccaaacatggaagagttataacccatgatttcaaaggctatagat |
35019823 |
T |
|
| Q |
112 |
ttaggacgtgaagcaaaagttttgtcgtttacggtaaaacactgtttcaccatttcataactgcttactactaaggttttgtgaacacctaaacgaacgg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35019822 |
ttaggacgtgaagcaaaagttttgtcgtttacggtaaaacactgtttcaccatttcataactgcttactactaaggttttgtgaacacctaaacgaacgg |
35019723 |
T |
|
| Q |
212 |
tgaagatgggtccgtatttgtcggctaagtttcctaaggtaacgtgaggtggttgggaaccacctaagaggtggaggtggccgattaacggccaagatcc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35019722 |
tgaagatgggtccgtatttgtcggctaagtttcctaaggtgacgtgaggtggttgggaaccacctaagaggtggaggtggccgattaacggccatgatcc |
35019623 |
T |
|
| Q |
312 |
gccggcttccggtggtgtctttgaagctatgcggcttctatgtagacgaaatagaaggaagagaaagaagaag |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35019622 |
gccggcttccggtggtgtctttgaagctatgcggcttctatgtaggcgaaatagaaggaagagaaagaagaag |
35019550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 25 - 377
Target Start/End: Complemental strand, 35030001 - 35029639
Alignment:
| Q |
25 |
attttacgcacggtacgccaataagaaccataaggactcaaaccaaacatggaaaagttataacccatgatttcaaaggctatagatttaggacgtgaag |
124 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||||| || | |||||||||||| |||||| |||||||||| |
|
|
| T |
35030001 |
attttacgcactgtacgccaataagaaccataaggactgaaacctatcatggaaaagttataccctaaaatttcaaaggctgcagatttcggacgtgaag |
35029902 |
T |
|
| Q |
125 |
caaaagttttgtcgtttacggtaaaacactgtttcaccatttcataactgcttactactaaggttttgtgaacacctaaacgaacggtgaa-gatgggtc |
223 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35029901 |
caaaagttttgtcatttacggtgaaacattgtttcaccatttcataactgcttacaactaaggttttgtgaacacctaaacgaacggtgaaggatgggtc |
35029802 |
T |
|
| Q |
224 |
cgtatttgtcggctaagtttcctaaggtaacgtgaggtggttgggaaccacctaagaggtggaggtggccgattaacggccaagatccgccggcttc--- |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||| |||||| |
|
|
| T |
35029801 |
cgtatttgtcggctaagtttcctaaggtaacgtgaggtggttgggacccacctaagaggtggaggtggccaattaacggccatgctccgctggcttctgg |
35029702 |
T |
|
| Q |
321 |
------cggtggtgtctttgaagctatgcggcttctatgtagacgaaatagaaggaagagaaa |
377 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
35029701 |
cggcggtggtggtgtctttgaagccatccggcttctatgtagacgaaagagaaggaagagaaa |
35029639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 35036105 - 35035826
Alignment:
| Q |
28 |
ttacgcacggtacgccaataagaaccataaggactcaaaccaaacatggaaaagttataacccatgatttcaaaggctatagatttaggacgtgaagcaa |
127 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
35036105 |
ttacgcaatgtacgccaataagaaccgtagggactcataccaaacatggaagagttataacccatgatttcaaaggctatagatttgggacgagaagcaa |
35036006 |
T |
|
| Q |
128 |
aagttttgtcgtttacggtaaaacactgtttcaccatttcataactgcttactactaaggttttgtgaacacctaaacgaacggtgaagatgggtccgta |
227 |
Q |
| |
|
| | |||||||||||| || ||||||||| | | ||||| ||||||| || ||||| ||| |||||||||||||| || |||||||||| |||||| |
|
|
| T |
35036005 |
aggctttgtcgtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcactgtgaagatggctccgta |
35035906 |
T |
|
| Q |
228 |
tttgtcggctaagtttcctaaggtaacgtgaggtggttgggaaccacctaagaggtggaggtggccgattaacggccaag |
307 |
Q |
| |
|
|||||||||||||||||| ||||| | | |||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35035905 |
tttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaaggccaag |
35035826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 28 - 320
Target Start/End: Complemental strand, 35044266 - 35043974
Alignment:
| Q |
28 |
ttacgcacggtacgccaataagaaccataaggactcaaaccaaacatggaaaagttataacccatgatttcaaaggctatagatttaggacgtgaagcaa |
127 |
Q |
| |
|
|||||||| || |||||||| ||||| |||||||| ||||| | ||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
35044266 |
ttacgcactgtgcgccaataggaaccgtaaggactgaaacctatcatggaaaagttatatcccaaaatttcaaaggctatagatttgggacgagaagcaa |
35044167 |
T |
|
| Q |
128 |
aagttttgtcgtttacggtaaaacactgtttcaccatttcataactgcttactactaaggttttgtgaacacctaaacgaacggtgaagatgggtccgta |
227 |
Q |
| |
|
| | | | |||||||| || || || |||||| |||||||| ||||||||| |||| |||||||||||||| ||||||| ||||||||| |||||||| |
|
|
| T |
35044166 |
aggctctatcgtttacagtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagataggtccgta |
35044067 |
T |
|
| Q |
228 |
tttgtcggctaagtttcctaaggtaacgtgaggtggttgggaaccacctaagaggtggaggtggccgattaacggccaagatccgccggcttc |
320 |
Q |
| |
|
||| ||||||| || |||||||| || |||||||| ||||| |||||||||||||||||||||||||| || ||||||| ||| |||||||| |
|
|
| T |
35044066 |
tttatcggctagcttccctaaggtgacatgaggtggctgggatccacctaagaggtggaggtggccgatcaaaggccaagctccaccggcttc |
35043974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 22061990 - 22061944
Alignment:
| Q |
205 |
cgaacggtgaagatgggtccgtatttgtcggctaagtttcctaaggt |
251 |
Q |
| |
|
|||| ||||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
22061990 |
cgaagggtgaagattggtccgtatttatcggctaagtctcctaaggt |
22061944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University