View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19749_low_3 (Length: 397)
Name: NF19749_low_3
Description: NF19749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19749_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 337
Target Start/End: Complemental strand, 27324625 - 27324298
Alignment:
| Q |
10 |
ccaagaatatcaagttacatccaaattcaattaaaatttattcataataccaaaattatccttactcgtttccttcccactcttatgaatgatacgtgat |
109 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
27324625 |
ccaaaaatatcaagttacacccaaattcaattaaaatttattcataataccaaaattatccttactcatttccttcccactcttatgaatggtacgtgat |
27324526 |
T |
|
| Q |
110 |
tttaattcacgttaggtaaattaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcttgc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27324525 |
tttaattcacgttaggtaaattaagtatatgtgatctgaattcatgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgc |
27324426 |
T |
|
| Q |
210 |
atctacactgtcttcacacagccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccct |
309 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27324425 |
atctacactgtcttcacacacccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccct |
27324326 |
T |
|
| Q |
310 |
ctcaaaggcaaacaccaaagcatataag |
337 |
Q |
| |
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|||||| ||||||||||||||||||||| |
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| T |
27324325 |
ctcaaatgcaaacaccaaagcatataag |
27324298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 337
Target Start/End: Complemental strand, 28359420 - 28359093
Alignment:
| Q |
10 |
ccaagaatatcaagttacatccaaattcaattaaaatttattcataataccaaaattatccttactcgtttccttcccactcttatgaatgatacgtgat |
109 |
Q |
| |
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|||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28359420 |
ccaaaaatatcaagttacacccaaattcatttaaaatttattcataatatcaaaattatccttactcatttccttcccactcttatgaatgatacgtgat |
28359321 |
T |
|
| Q |
110 |
tttaattcacgttaggtaaattaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcttgc |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28359320 |
tttaattcacgttaggtaaattaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgc |
28359221 |
T |
|
| Q |
210 |
atctacactgtcttcacacagccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccct |
309 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28359220 |
atctacattgtcttcacacacccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccct |
28359121 |
T |
|
| Q |
310 |
ctcaaaggcaaacaccaaagcatataag |
337 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
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|
| T |
28359120 |
ctcaaatgcaaacaccaaagcatataag |
28359093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 337
Target Start/End: Complemental strand, 3500859 - 3500529
Alignment:
| Q |
10 |
ccaagaatatcaagttacatccaaattcaattaaaatttattcataataccaaaattatccttactcgtttccttcccactcttatgaatgatacgtgat |
109 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
3500859 |
ccaaaaatatcaagttacacccaaattcaattaaaatttattcataataacaaaattatccttactcatttccttcccactcttatgaatgatacatgat |
3500760 |
T |
|
| Q |
110 |
tttaattcacgttaggtaaattaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatc---cacctgatacatgattcctttgttgct |
206 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
3500759 |
tttaattcacgttaggtaaattaagtatacgtgatctgaattcacgtgataaaacaacaacctcaaaatccaccacctgatacatgattcatttgttgcc |
3500660 |
T |
|
| Q |
207 |
tgcatctacactgtcttcacacagccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaac |
306 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
3500659 |
tgcatctacactgtcttcacacaaccatggatgatgatttccaccaaccaacaatatgaactatcatggaggatgcaattgcgaactatcagtgtgaaac |
3500560 |
T |
|
| Q |
307 |
cctctcaaaggcaaacaccaaagcatataag |
337 |
Q |
| |
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| ||||||| ||||||||||||||||||||| |
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|
| T |
3500559 |
cttctcaaatgcaaacaccaaagcatataag |
3500529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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