View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1974_high_14 (Length: 210)
Name: NF1974_high_14
Description: NF1974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1974_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 34657796 - 34657737
Alignment:
| Q |
18 |
caatgcttctgtaagtggcatatgtaataagaagaacatgccagagtctagaatatttgc |
77 |
Q |
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| T |
34657796 |
caatgcttctgtaagtggcatatgtaataagaagaacatgccagagtctagagtatttgc |
34657737 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 34657699 - 34657641
Alignment:
| Q |
140 |
gttaaatataacatcctata-tagtaaactactttggttatttcaattcagatattctt |
197 |
Q |
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| T |
34657699 |
gttaaatataacatcctataatagtaaactactttggttatttcaattcagatattctt |
34657641 |
T |
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