View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1974_high_3 (Length: 438)
Name: NF1974_high_3
Description: NF1974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1974_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 3929943 - 3929628
Alignment:
| Q |
1 |
gaaagggcttagaagatttgattacattgcatggattcacagttattttctttagatgtttagatgatagagttttannnnnnnngttaggatttgaatc |
100 |
Q |
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| T |
3929943 |
gaaagggcttagaagatttgattacattgcatggattcacagttattttctttagatgtttagatgatagagttttattttgtt-gttaggatttgaatc |
3929845 |
T |
|
| Q |
101 |
taatttctcttggaaaaagtgaatcttgaattttgaattgatctgttgaatctatgatacttaatcaaattgattgcatttaattgttcaaactaatttt |
200 |
Q |
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| T |
3929844 |
taatttctcttggaaaaagtgaatcttgaattttgaattgatctgttgaatctatgatacttaatcaaattgattgcatttaattgttcaaactaatttt |
3929745 |
T |
|
| Q |
201 |
caattttgtttaacttgatttgatgaaaatttgatcatagtaactaatttgttgctttttagctttgaagttgggaaattttgcttcaattttaatatcg |
300 |
Q |
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| T |
3929744 |
caattttgtttaacttgatttgatgaaaattcgatcatagtaactaatttgttgctttttagctttgacgttgggaaattttgcttcaattttaatattg |
3929645 |
T |
|
| Q |
301 |
aagttgtctatggatat |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
3929644 |
aagttgtctatggatat |
3929628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 3929520 - 3929455
Alignment:
| Q |
355 |
aatcatttatcaggtagtcaaatttactacactaaatcaatttagcaataaaaacctggtatgcat |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3929520 |
aatcatttatcaggtagtcaaatttactacactaaatcaatttagcaataaaaacctggtatgcat |
3929455 |
T |
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