View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1974_low_1 (Length: 671)
Name: NF1974_low_1
Description: NF1974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1974_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 267 - 656
Target Start/End: Original strand, 36890631 - 36891004
Alignment:
| Q |
267 |
gcaatatattgttcttttacgcatatatcaagagaaaaacattgacataacaaatgtttttctatgactaattacacatgaattaatggaagatcataag |
366 |
Q |
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| T |
36890631 |
gcaatatattgttcttttacacatatatcaagagaaaaacattgacataacaaatgtttttctatgactaat-acacatg--------gaagat---aag |
36890718 |
T |
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| Q |
367 |
caggcaacaagctacaagctgcgctgctagcttttttggatgacacatatattt-acttctgnnnnnnnggtagaaacagatattgacatat--tgttct |
463 |
Q |
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| T |
36890719 |
caggcaacaagct-------gcgccgctagctttttcggatgacacatatattttacttctgttttttaggtagaaacagatattgacatatattgtgct |
36890811 |
T |
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| Q |
464 |
ataattggttatacatatgtgttatctgatgaaacagatttggctgtgatagtagtacattactatgatttcctaagcacacatctgaacaaagaagaat |
563 |
Q |
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| T |
36890812 |
ataattggttatacatatgtgttatgtgatgaaacagatttggctgtgatagtagtacattactatgatttcctaagcacacatctgaacaaagaagaat |
36890911 |
T |
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| Q |
564 |
caactcctctcaaagtccttgccactagaccttcagccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgtaagt |
656 |
Q |
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| T |
36890912 |
caactcctctcaaagtccttgccactagaccttcagccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgtaagt |
36891004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 496 - 656
Target Start/End: Original strand, 36877777 - 36877937
Alignment:
| Q |
496 |
aacagatttggctgtgatagtagtacattactatgatttcctaagcacacatctgaacaaagaagaatcaactcctctcaaagtccttgccactagacct |
595 |
Q |
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| T |
36877777 |
aacagatttggctgtgataatagtacatcaatatgattacctcagcacacatctgaacaaagaaggatcaactcctctcaaagtccttgcagctagacct |
36877876 |
T |
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| Q |
596 |
tcagccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgtaagt |
656 |
Q |
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| T |
36877877 |
tcagccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgtaagt |
36877937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 36890207 - 36890374
Alignment:
| Q |
34 |
tgaaataagaacatacataactgtgaaagtaattaataattattttatnnnnnnntggagaggggaaatttgattaataagagtgacactaatgatcaaa |
133 |
Q |
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| T |
36890207 |
tgaaataagaacatacataactgtgaaagtaatttataattattttataaaaaaatggagaggggaaatttgattaataagagtgacacaaataatcaaa |
36890306 |
T |
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| Q |
134 |
ttacaactcagatgaaatttgaaccaccgaacggacacctcttggacatagctattccgtttatattt |
201 |
Q |
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| T |
36890307 |
ttacaactcagatgaaatttgaaccaccgaacggacacctcttggatatggctattccgtttatattt |
36890374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 498 - 662
Target Start/End: Original strand, 36897546 - 36897710
Alignment:
| Q |
498 |
cagatttggctgtgatagtagtacattactatgatttcctaagcacacatctgaacaaagaagaatcaactcctctcaaagtccttgccactagaccttc |
597 |
Q |
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||||||| ||||||||| ||| | ||||||||| |||||| |||||||||| |||| |||| | ||| |||||||| | ||||||| | || ||||| |
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| T |
36897546 |
cagatttagctgtgataatagcaaattactatgctttccttagcacacatcagaacgaagaggtatccactcctctgtatctccttgctaataagccttc |
36897645 |
T |
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| Q |
598 |
agccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgtaagtgatgat |
662 |
Q |
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| T |
36897646 |
agctttcaaaagttctagcagcctaccatggtataaacgaatcctatactacagtaagtaatgat |
36897710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 29824627 - 29824582
Alignment:
| Q |
96 |
gggaaatttgattaataagagtgacactaatgatcaaattacaact |
141 |
Q |
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| T |
29824627 |
gggaaattttattaataacagtggcactaatgaccaaattacaact |
29824582 |
T |
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