View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1974_low_10 (Length: 271)
Name: NF1974_low_10
Description: NF1974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1974_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 24300955 - 24300705
Alignment:
| Q |
15 |
atcattacattgtcccactgggatattgaaaagaatcaaatctatttacatttcaattaccaagtctctgagctttgtgctttctcccttttcaatacag |
114 |
Q |
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| T |
24300955 |
atcattacattgtcccactgggatattgaaaagaatcaaatctatttacatttcaattaccaagtctctgagctttgtgctttctcccttttcaatacag |
24300856 |
T |
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| Q |
115 |
tttgtaaagctccattaccaccgattttgccacaaaagtcaaaaaagcagtagaaaaacatctcactatgttgttctctcatggagaaggtaagagataa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24300855 |
tttgtaaagctccattaccaccgattttgccacaaaagtcaaaaaagcagtagaaaaacatctcactatgttgttctctcatggagaaggtaagagataa |
24300756 |
T |
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| Q |
215 |
agaaagtatgtgatggaaaaatt-aaaagagaggctcgtaaacctatgcta |
264 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24300755 |
agaaagtatgtgatggaaaaattaaaaagagaggctcgtaaacctatgcta |
24300705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 123 - 264
Target Start/End: Original strand, 19618731 - 19618876
Alignment:
| Q |
123 |
gctccattaccaccgattttgccacaaaagtcaaaaaagcagtagaaaaacatctcactatgttgttctctc---atggagaaggtaagagataaagaaa |
219 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
19618731 |
gctccattaccaccgattttgccacaaaagtaaaaaaagcagtagaaaaacatctcactatgttgctctctcatgatggagaaggtaagagataaagaaa |
19618830 |
T |
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| Q |
220 |
gtatgtgatggaaaaatt-aaaagagaggctcgtaaacctatgcta |
264 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19618831 |
gtatgtgatggaaaaattaaaaagagaggctcgtaaacctatgcta |
19618876 |
T |
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