View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1974_low_11 (Length: 238)

Name: NF1974_low_11
Description: NF1974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1974_low_11
NF1974_low_11
[»] chr8 (21 HSPs)
chr8 (1-220)||(39784451-39784670)
chr8 (1-220)||(35745632-35745852)
chr8 (45-220)||(25327790-25327965)
chr8 (46-220)||(10683865-10684039)
chr8 (61-217)||(7289557-7289713)
chr8 (62-220)||(6311651-6311809)
chr8 (60-220)||(18852753-18852912)
chr8 (61-220)||(10688725-10688884)
chr8 (60-220)||(18870147-18870306)
chr8 (60-220)||(30655997-30656156)
chr8 (60-220)||(4759660-4759819)
chr8 (87-217)||(36979756-36979885)
chr8 (60-220)||(1261541-1261702)
chr8 (161-220)||(33037413-33037472)
chr8 (60-123)||(33037490-33037553)
chr8 (162-217)||(42575724-42575779)
chr8 (162-220)||(3439213-3439271)
chr8 (163-217)||(15290273-15290327)
chr8 (163-217)||(15470642-15470696)
chr8 (162-220)||(25689667-25689725)
chr8 (1-41)||(10684068-10684108)
[»] chr4 (23 HSPs)
chr4 (1-220)||(5732902-5733120)
chr4 (1-220)||(45347443-45347663)
chr4 (1-220)||(18855964-18856183)
chr4 (1-220)||(45356924-45357143)
chr4 (1-220)||(3814261-3814480)
chr4 (42-220)||(9228812-9228990)
chr4 (42-220)||(9224025-9224203)
chr4 (60-220)||(18712381-18712541)
chr4 (61-220)||(56141638-56141797)
chr4 (70-220)||(24742302-24742451)
chr4 (64-220)||(51520769-51520924)
chr4 (70-123)||(29761002-29761055)
chr4 (161-220)||(29761073-29761132)
chr4 (162-220)||(7122393-7122451)
chr4 (162-220)||(7124615-7124673)
chr4 (162-217)||(8393111-8393166)
chr4 (162-217)||(8395320-8395375)
chr4 (70-220)||(13992602-13992752)
chr4 (162-217)||(5135779-5135834)
chr4 (162-217)||(5138005-5138060)
chr4 (162-220)||(31495717-31495775)
chr4 (70-146)||(8393183-8393256)
chr4 (70-146)||(8395392-8395465)
[»] chr1 (18 HSPs)
chr1 (1-220)||(1054640-1054859)
chr1 (1-220)||(39445737-39445956)
chr1 (1-220)||(44023503-44023721)
chr1 (1-220)||(25439525-25439743)
chr1 (1-220)||(25444718-25444936)
chr1 (60-220)||(41390900-41391060)
chr1 (60-220)||(41398555-41398715)
chr1 (1-217)||(43988078-43988306)
chr1 (60-220)||(24786951-24787110)
chr1 (71-220)||(24793773-24793921)
chr1 (60-220)||(20622534-20622694)
chr1 (162-217)||(44203347-44203402)
chr1 (70-217)||(24202360-24202507)
chr1 (162-217)||(9036132-9036187)
chr1 (70-220)||(9986912-9987062)
chr1 (70-146)||(9036204-9036277)
chr1 (161-220)||(21053666-21053726)
chr1 (107-217)||(40282088-40282200)
[»] chr6 (33 HSPs)
chr6 (1-220)||(6438738-6438957)
chr6 (1-220)||(28155197-28155417)
chr6 (1-220)||(16838985-16839204)
chr6 (1-220)||(6005658-6005880)
chr6 (1-220)||(33330059-33330289)
chr6 (1-220)||(33335556-33335786)
chr6 (1-220)||(5343718-5343938)
chr6 (63-217)||(14737195-14737349)
chr6 (63-217)||(14742055-14742209)
chr6 (42-220)||(22010315-22010493)
chr6 (64-220)||(11857286-11857441)
chr6 (70-220)||(5674356-5674505)
chr6 (161-220)||(5266487-5266546)
chr6 (162-220)||(6136363-6136421)
chr6 (162-220)||(33342503-33342561)
chr6 (179-220)||(30125144-30125185)
chr6 (72-123)||(5266418-5266469)
chr6 (162-217)||(6026963-6027018)
chr6 (162-217)||(13150979-13151034)
chr6 (162-217)||(34164574-34164629)
chr6 (162-217)||(34166796-34166851)
chr6 (162-217)||(16554583-16554638)
chr6 (162-217)||(16578917-16578972)
chr6 (162-217)||(16616408-16616463)
chr6 (162-217)||(16631139-16631194)
chr6 (162-217)||(25420926-25420981)
chr6 (162-217)||(25421020-25421075)
chr6 (161-219)||(3073157-3073215)
chr6 (80-146)||(16554655-16554720)
chr6 (80-146)||(16631211-16631276)
chr6 (80-146)||(16652898-16652963)
chr6 (162-220)||(22709460-22709518)
chr6 (161-220)||(411812-411872)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-220)||(600-819)
[»] chr5 (35 HSPs)
chr5 (1-220)||(28807202-28807421)
chr5 (1-220)||(37561073-37561292)
chr5 (1-220)||(33768425-33768645)
chr5 (1-220)||(33791557-33791777)
chr5 (1-220)||(2785616-2785836)
chr5 (1-220)||(37556251-37556470)
chr5 (1-220)||(31396616-31396835)
chr5 (42-220)||(15044976-15045154)
chr5 (1-220)||(31401473-31401692)
chr5 (64-220)||(1456764-1456920)
chr5 (65-220)||(31180568-31180723)
chr5 (64-220)||(27445285-27445440)
chr5 (64-220)||(27450128-27450283)
chr5 (64-220)||(43592591-43592746)
chr5 (64-220)||(43599036-43599191)
chr5 (64-220)||(43604528-43604683)
chr5 (64-220)||(43610020-43610175)
chr5 (63-220)||(24136201-24136357)
chr5 (160-220)||(30631762-30631822)
chr5 (168-220)||(29402676-29402728)
chr5 (60-217)||(29751458-29751615)
chr5 (162-220)||(25077832-25077890)
chr5 (162-220)||(25135801-25135859)
chr5 (70-217)||(35388022-35388169)
chr5 (162-220)||(22536668-22536726)
chr5 (70-146)||(10593044-10593118)
chr5 (162-217)||(10592972-10593027)
chr5 (162-217)||(16544123-16544178)
chr5 (162-217)||(16546345-16546400)
chr5 (162-217)||(40379807-40379862)
chr5 (162-217)||(40382018-40382073)
chr5 (162-220)||(9789624-9789682)
chr5 (162-220)||(18442048-18442106)
chr5 (162-220)||(26177593-26177651)
chr5 (161-220)||(29720092-29720152)
[»] chr2 (10 HSPs)
chr2 (1-217)||(32247026-32247244)
chr2 (1-220)||(19344663-19344883)
chr2 (1-220)||(19349521-19349741)
chr2 (60-220)||(39811603-39811763)
chr2 (70-220)||(14291850-14291999)
chr2 (70-220)||(11098513-11098662)
chr2 (63-220)||(9295988-9296144)
chr2 (162-220)||(12647783-12647841)
chr2 (182-220)||(3492212-3492250)
chr2 (162-220)||(25410081-25410139)
[»] chr3 (36 HSPs)
chr3 (1-220)||(18656672-18656902)
chr3 (1-220)||(2672545-2672775)
chr3 (1-220)||(2676701-2676931)
chr3 (1-220)||(24968348-24968578)
chr3 (1-220)||(32475725-32475945)
chr3 (1-220)||(32480583-32480803)
chr3 (46-220)||(8512527-8512701)
chr3 (46-220)||(8517407-8517581)
chr3 (60-220)||(28503445-28503605)
chr3 (60-217)||(28501281-28501438)
chr3 (60-220)||(8738649-8738808)
chr3 (60-220)||(9090887-9091046)
chr3 (70-220)||(7167607-7167756)
chr3 (70-220)||(40372382-40372531)
chr3 (70-220)||(27352207-27352356)
chr3 (59-220)||(22172788-22172968)
chr3 (87-220)||(8477744-8477876)
chr3 (70-123)||(2671268-2671321)
chr3 (161-220)||(2671191-2671250)
chr3 (162-220)||(4598922-4598980)
chr3 (162-220)||(4601143-4601201)
chr3 (162-217)||(10055935-10055990)
chr3 (162-217)||(10058157-10058212)
chr3 (162-217)||(10060379-10060434)
chr3 (162-217)||(10062601-10062656)
chr3 (162-217)||(10064823-10064878)
chr3 (162-217)||(10067045-10067100)
chr3 (162-220)||(6716211-6716269)
chr3 (162-220)||(6718395-6718453)
chr3 (162-220)||(25637139-25637197)
chr3 (162-220)||(54634836-54634894)
chr3 (162-217)||(10208908-10208963)
chr3 (162-217)||(10211108-10211163)
chr3 (162-217)||(45282695-45282750)
chr3 (1-41)||(8512458-8512498)
chr3 (1-41)||(8517338-8517378)
[»] scaffold0197 (3 HSPs)
scaffold0197 (1-220)||(18790-19009)
scaffold0197 (46-220)||(13910-14084)
scaffold0197 (1-41)||(14113-14153)
[»] chr7 (30 HSPs)
chr7 (1-220)||(21811865-21812084)
chr7 (60-220)||(24023945-24024103)
chr7 (45-220)||(31109197-31109372)
chr7 (1-220)||(16880314-16880534)
chr7 (2-220)||(16885170-16885389)
chr7 (42-220)||(4873417-4873595)
chr7 (46-220)||(24265803-24265977)
chr7 (1-220)||(24260947-24261167)
chr7 (42-220)||(12397200-12397379)
chr7 (80-220)||(12406591-12406731)
chr7 (70-220)||(2058330-2058479)
chr7 (72-220)||(1533030-1533177)
chr7 (161-220)||(21640238-21640297)
chr7 (65-123)||(20357231-20357289)
chr7 (60-220)||(24789553-24789712)
chr7 (160-220)||(20357154-20357214)
chr7 (162-217)||(6592737-6592792)
chr7 (162-217)||(6594953-6595008)
chr7 (60-123)||(21640157-21640220)
chr7 (1-46)||(19992552-19992597)
chr7 (162-217)||(32060704-32060759)
chr7 (162-220)||(20343626-20343684)
chr7 (70-217)||(21646366-21646513)
chr7 (70-217)||(1562312-1562458)
chr7 (162-218)||(18409214-18409270)
chr7 (162-217)||(18389160-18389215)
chr7 (162-217)||(18392596-18392651)
chr7 (162-220)||(18414090-18414148)
chr7 (162-220)||(43504536-43504594)
chr7 (1-41)||(24266006-24266046)
[»] scaffold0135 (1 HSPs)
scaffold0135 (42-220)||(34680-34858)
[»] scaffold0355 (1 HSPs)
scaffold0355 (64-220)||(3463-3619)
[»] scaffold0259 (1 HSPs)
scaffold0259 (48-220)||(1865-2037)
[»] scaffold0028 (1 HSPs)
scaffold0028 (48-220)||(148570-148742)
[»] scaffold0009 (2 HSPs)
scaffold0009 (59-220)||(176576-176737)
scaffold0009 (1-41)||(176781-176821)
[»] scaffold0665 (1 HSPs)
scaffold0665 (145-217)||(8091-8163)
[»] scaffold0674 (1 HSPs)
scaffold0674 (162-220)||(4126-4184)
[»] scaffold0565 (1 HSPs)
scaffold0565 (162-220)||(3001-3059)
[»] scaffold0286 (1 HSPs)
scaffold0286 (162-220)||(22066-22124)
[»] scaffold0491 (2 HSPs)
scaffold0491 (70-220)||(11477-11627)
scaffold0491 (162-220)||(9124-9182)
[»] scaffold0137 (1 HSPs)
scaffold0137 (162-217)||(5989-6044)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 39784670 - 39784451
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39784670 ccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttctcttcaaaaaagcacaagaacacaatatatactagtcttccc 39784571  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39784570 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccaacaagtttct 39784471  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||    
T  39784470 gaatcgtgtcacgatttccc 39784451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 35745632 - 35745852
Alignment:
Q  1 ccccataggatcccc-tctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcc 99  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||  || ||||||||| | |    
T  35745632 ccccaaaggatccccatctttgatctccaagttttctctcttaagctctcttaaggttatctccaaaaaagcacaagaacactttaaatactagtcctgc 35745731  T
Q  100 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  35745732 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcatagatacttaaccagcaagtttc 35745831  T
Q  200 tgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||    
T  35745832 tgaatcgtgtcacgatttccc 35745852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 25327965 - 25327790
Alignment:
Q  45 ctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatct 144  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25327965 ctctcttaagttcttcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgagct 25327866  T
Q  145 gcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25327865 gcaacggacccaaggttgacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 25327790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 10684039 - 10683865
Alignment:
Q  46 tctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctg 145  Q
    ||||||||||||  |||||||| |||||||||||||  || ||||||||| |  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  10684039 tctcttaaggttaccttcaaaagagcacaagaacactttaaatactagtcctgtcctgaggaaatcgtgccacgatttccctagatcgtgtcacgatctg 10683940  T
Q  146 caacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  10683939 caacggtccccaagttgaccagtccttatcagagatacttaacgagcaagtttctgaatcgtgtcacgatttccc 10683865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 61 - 217
Target Start/End: Complemental strand, 7289713 - 7289557
Alignment:
Q  61 ttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt 160  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| | |  || ||||    
T  7289713 ttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttcccaagatcgtgtcacgatttgcatctgatccaaggt 7289614  T
Q  161 tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
     ||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  7289613 agacaagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgattt 7289557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 62 - 220
Target Start/End: Original strand, 6311651 - 6311809
Alignment:
Q  62 tcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt 161  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||   ||||||||||||| |||| | | ||| |||||    
T  6311651 tcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaattgtgccacgatttcccacaatcgtgtcacgatttgcatctgacccaaggtt 6311750  T
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  6311751 gacaagtccttattagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 6311809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 18852912 - 18852753
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  | |||||||||||||||||  | | ||| |||    
T  18852912 cttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcc--aaatcgtgtcacgatctgcgtctgacccaagg 18852815  T
Q  160 t-tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18852814 tatgaccagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 18852753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 10688884 - 10688725
Alignment:
Q  61 ttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt 160  Q
    |||||||  |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||   ||||||||||||| |||| | | ||| ||||    
T  10688884 ttcaaaactgcacaagaacacaatatatactagtcttcctctgaagaaattgtgccacgatttcccacaatcgtgtcacgatttgcatctgacccaaggt 10688785  T
Q  161 tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  10688784 tgacaagtccttattagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 10688725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 18870306 - 18870147
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    |||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| |  | |||||||||||||||||  | | ||| |||    
T  18870306 cttcaaaaaagcacaagaacacaatatatactagtctttctctgaagcaatcgtgccacgattttc--aaatcgtgtcacgatctgcgtctgacccaagg 18870209  T
Q  160 t-tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    | |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  18870208 tatgaccagtccttattagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 18870147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 30655997 - 30656156
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  ||||||||||||||| |||  | | ||| |||    
T  30655997 cttcaaaaaaacacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcc--agatcgtgtcacgatttgcgtctgacccaagg 30656094  T
Q  160 -ttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
     |||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  30656095 tttgaccagtccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 30656156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 4759819 - 4759660
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||||||||||| |||  | || || |||    
T  4759819 cttcaaacaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgtcacgatttcc--agatcgtgtcacgatttgcgtccgttccaagg 4759722  T
Q  160 t-tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    | ||||||||||||||||  |||||||||| ||||||||||| |||||||||||||||||||    
T  4759721 tatgaccagtccttatcaaggatacttaacgagcaagtttctaaatcgtgtcacgatttccc 4759660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 36979756 - 36979885
Alignment:
Q  87 atactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccagtccttatcagtgatactt 185  Q
    ||||||| ||||| |||||| ||||||||||||||||||  ||||||||||||||| |||      ||| |||| ||||||||||||||||| |||||||    
T  36979756 atactagccttcctctgaagcaatcgtgccacgatttcc--agatcgtgtcacgatttgcgtacaacccaaggtatgaccagtccttatcagagatactt 36979853  T
Q  186 aaccagcaagtttctgaatcgtgtcacgattt 217  Q
    ||| ||||||||||||||||||||||||||||    
T  36979854 aacgagcaagtttctgaatcgtgtcacgattt 36979885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 1261702 - 1261541
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacg---gtcccc 156  Q
    ||||||||||||||||||||||  || ||||||| ||||| ||||  |||||||| ||||||||||  ||||||||||||||| || ||||   |||||     
T  1261702 cttcaaaaaagcacaagaacactttaaatactagccttcctctgataaaatcgtgtcacgatttcc--agatcgtgtcacgatttg-aacgtatgtccca 1261606  T
Q  157 aggt-tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||| ||||||||||||||||  |||||||||| |||||||||   |||||||||||||||||||    
T  1261605 aggtatgaccagtccttatcaaggatacttaacgagcaagtttgaaaatcgtgtcacgatttccc 1261541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 33037472 - 33037413
Alignment:
Q  161 tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  33037472 tgaccagtccttatcagtgatacttaatgagcaagtttctgaatcgtgtcacgatttccc 33037413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 33037553 - 33037490
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgattt 123  Q
    ||||||||||||||||||||||||||||||||||||| |  |||||| ||||||| ||||||||    
T  33037553 cttcaaaaaagcacaagaacacaatatatactagtctccttctgaagcaatcgtgtcacgattt 33037490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 42575724 - 42575779
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  42575724 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 42575779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 3439271 - 3439213
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| ||||||||||   ||||||||||||||||||    
T  3439271 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttccc 3439213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 15290327 - 15290273
Alignment:
Q  163 accagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    ||||||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  15290327 accagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 15290273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 15470696 - 15470642
Alignment:
Q  163 accagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    ||||||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  15470696 accagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 15470642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 25689725 - 25689667
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| ||||||||||   ||||||| ||||||||||    
T  25689725 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtgacgatttccc 25689667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10684108 - 10684068
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctctt 41  Q
    ||||| |||||||||||||||||||| ||||| ||||||||    
T  10684108 ccccaaaggatcccctctttgatctccaagttatctctctt 10684068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5732902 - 5733120
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  5732902 ccccataggatcccctctttgatctccaagttttctctcttaagctctcttaaggttgtcttcaaaaaa-cacaagaacacaatatatactagtcctccc 5733000  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5733001 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 5733100  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||    
T  5733101 gaatcgtgtcacgatttccc 5733120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 45347663 - 45347443
Alignment:
Q  1 ccccataggatcccctctttgatctctaag-ttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcc 99  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45347663 ccccataggatcccctctttgatctccaagattttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagttttcc 45347564  T
Q  100 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45347563 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggttcccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 45347464  T
Q  200 tgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||    
T  45347463 tgaatcgtgtcacgatttccc 45347443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 18855964 - 18856183
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    ||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18855964 ccccataggctcccctctttgatctccaagatttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 18856063  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18856064 ctgaagaaatcgtgccacgatttccctagatcatgtcacgatctgcaacggttcccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 18856163  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||    
T  18856164 gaatcgtgtcacgatttccc 18856183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 45357143 - 45356924
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45357143 ccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcctccc 45357044  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    | |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45357043 cagaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacggttcccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 45356944  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||    
T  45356943 gaatcgtgtcacgatttccc 45356924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 3814261 - 3814480
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    ||||||||||||||  ||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3814261 ccccataggatccctcctttgatgtccaagttttctctcttaagctctcctaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 3814360  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  3814361 ctgaagaaatcgtgtcacgatttccctagatcttgtcacgatctgcaacggttctcaggttgaccagtccttatcagtgatacttaaccagcaagtttct 3814460  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||    
T  3814461 gaatcgtgtcacgatttccc 3814480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 9228990 - 9228812
Alignment:
Q  42 aagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 141  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9228990 aagctctcttaagattcacttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttccctagatcgtgtcacga 9228891  T
Q  142 tctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||| ||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9228890 tctgcaacggacccaaggtagacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 9228812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 9224203 - 9224025
Alignment:
Q  42 aagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 141  Q
    ||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  9224203 aagctctcttaagattcacttcaaaaaagcagaagaacacaatatatactagtcttcctctgaagaaattgtgccacgatttccctagatcgtgtcacga 9224104  T
Q  142 tctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||| ||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9224103 tctgcaacggacccaaggtagacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 9224025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 18712541 - 18712381
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| ||| |||    
T  18712541 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgattttcctagattgtgtcacgatcttcaacggacccaagg 18712442  T
Q  160 ttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18712441 ttgacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 18712381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 56141797 - 56141638
Alignment:
Q  61 ttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt 160  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| | | ||| ||||    
T  56141797 ttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttcccaagatcgtgtcacgatttgcatctgacccaaggt 56141698  T
Q  161 tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
     |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  56141697 agaccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 56141638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 24742302 - 24742451
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccagt 168  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||| |||||| |||  | || ||||||| ||||||||    
T  24742302 gcacaagaacacaatatatactagtcttcctctgaagaaatcgtgtcacgatttcc--agatcgtggcacgatttgcgtccgttcccaggtatgaccagt 24742399  T
Q  169 ccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  24742400 ccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 24742451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 51520769 - 51520924
Alignment:
Q  64 aaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 163  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  51520769 aaaaaagcacaagaacacaatatatactagccttcctctgaagcaattgtgccacgatttccc-aaatcgtgtcacgatttgcgtctgacccaaggtaga 51520867  T
Q  164 ccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
     ||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  51520868 tcagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcatgatttccc 51520924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 29761002 - 29761055
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgattt 123  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29761002 gcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgattt 29761055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 29761073 - 29761132
Alignment:
Q  161 tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  29761073 tgaccagtccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 29761132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 7122451 - 7122393
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||    
T  7122451 gaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgatttccc 7122393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 7124673 - 7124615
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||    
T  7124673 gaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgatttccc 7124615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 8393166 - 8393111
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||||||||||||    
T  8393166 gaccagtccttatcacggatacttaacgagcaagtttctggatcgtgtcacgattt 8393111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 8395375 - 8395320
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||| || ||||||||||||    
T  8395375 gaccagtccttatcacggatacttaacgagcaagtttctggattgtgtcacgattt 8395320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 13992602 - 13992752
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacg---gtccccaggt-tgacc 165  Q
    ||||||||||||  || ||||||||||||| ||||  |||||||| ||||||||||  ||||||||||||||| ||  |||   ||| | |||| |||||    
T  13992602 gcacaagaacact-taaatactagtcttccactgataaaatcgtgtcacgatttcc--agatcgtgtcacgat-tgatacgtacgtcacaaggtatgacc 13992697  T
Q  166 agtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||   | ||||||| |||||||||   |||||||||||||||||||    
T  13992698 agtccttatcatgaaaacttaacgagcaagtttgaaaatcgtgtcacgatttccc 13992752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 5135834 - 5135779
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||| ||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  5135834 gaccggtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 5135779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 5138060 - 5138005
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||| ||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  5138060 gaccggtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 5138005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 31495717 - 31495775
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  || ||||||| |||||||||   |||||||||||||||||||    
T  31495717 gaccagtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttccc 31495775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 8393256 - 8393183
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgc 146  Q
    ||||||||||||  | |||||||| ||||| |||  ||||||||| ||||||||||| | |||||||||||||||||    
T  8393256 gcacaagaacac--tttatactagccttcctctgttgaaatcgtgtcacgatttccc-aaatcgtgtcacgatctgc 8393183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 8395465 - 8395392
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgc 146  Q
    ||||||||||||  | |||||||| ||||| |||  ||||||||| ||||||||||| | |||||||||||||||||    
T  8395465 gcacaagaacac--tttatactagccttcctctgttgaaatcgtgtcacgatttccc-aaatcgtgtcacgatctgc 8395392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1054859 - 1054640
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1054859 ccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcctccc 1054760  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  1054759 ctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacggttcccaggttgaccagtccttatcagtgatacttaactagcaagtttct 1054660  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||    
T  1054659 gaatcgtgtcacgatttccc 1054640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 39445737 - 39445956
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  39445737 ccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcctgcc 39445836  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39445837 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaacgagcaagtttct 39445936  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    | ||||||||| ||||||||    
T  39445937 ggatcgtgtcatgatttccc 39445956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 44023721 - 44023503
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| |||| ||||    
T  44023721 ccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttatcctcaaaaa-gcacaagaacacaatatataccagtcctccc 44023623  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44023622 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 44023523  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||    
T  44023522 gaatcgtgtcacgatttccc 44023503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 25439743 - 25439525
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  25439743 ccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtcttcaaaaa-gcacaagaacacaataaatactagtcctccc 25439645  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25439644 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacagtccccaggttgaccagtccttatcagagatacttaaccagcaagtttct 25439545  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    | ||||||||||||||||||    
T  25439544 ggatcgtgtcacgatttccc 25439525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 25444936 - 25444718
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  25444936 ccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtcttcaaaaa-gcacaagaacacaataaatactagtcctccc 25444838  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||    
T  25444837 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccctaggttgaccagtccttatcagagatacttaaccaacaagtttct 25444738  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    | ||||||||||||||||||    
T  25444737 ggatcgtgtcacgatttccc 25444718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 41390900 - 41391060
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  41390900 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcagcggaccccagg 41390999  T
Q  160 ttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||    
T  41391000 ttgaccagtccttatcagtgatacttaatgagcaagtttctgaatcatgtcacgatttccc 41391060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 41398555 - 41398715
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  41398555 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcagcggaccccagg 41398654  T
Q  160 ttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  41398655 ttgaccagtccttatcaatgatacttaatgagcaagtttctgaatcgtgtcacgatttccc 41398715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 43988306 - 43988078
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtctt-----------caaaaaa-gcacaagaacacaatatat 88  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||           ||||||| |||||||| |||  || ||    
T  43988306 ccccaaaggatcccctctttgatctccaagttttctctcttaagttctctcaaggttgtcttaaggttatctccaaaaaatgcacaagagcactttaaat 43988207  T
Q  89 actagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaac 188  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||    
T  43988206 actagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatatgcaacggtccccaagttgaccagtccttatcagagatacttaac 43988107  T
Q  189 cagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||||||||||||||||    
T  43988106 cagcaagtttctgaatcgtgtcacgattt 43988078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 24787110 - 24786951
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  ||||||||||||||| |||  | | ||| |||    
T  24787110 cttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcc--agatcgtgtcacgatttgcgtctgacccaagg 24787013  T
Q  160 -ttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
     |||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  24787012 tttgaccagtccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 24786951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 24793921 - 24793773
Alignment:
Q  71 cacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt-gaccagtc 169  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  ||||||||||||||| |||  | | ||| ||||| ||||||||    
T  24793921 cacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcc--agatcgtgtcacgatttgcgtctgacccaaggtttgaccagtc 24793824  T
Q  170 cttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  24793823 cttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 24793773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 20622534 - 20622694
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    ||||||| | ||||||||||||  |||||||||| ||||| |||||| ||| ||| |||||||| || | ||| || |||||| |||      ||| |||    
T  20622534 cttcaaagatgcacaagaacactttatatactagccttcctctgaagcaattgtgtcacgattttccaa-atcatgccacgatttgcgtaccacccaagg 20622632  T
Q  160 t-tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    | ||||||||||||||||  |||||||||| ||||||||||  |||||||||||||||||||    
T  20622633 tatgaccagtccttatcaaggatacttaacgagcaagtttcacaatcgtgtcacgatttccc 20622694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 44203402 - 44203347
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||||||||||||    
T  44203402 gaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgattt 44203347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 24202507 - 24202360
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacg---gtccccaggt-tgacc 165  Q
    ||||||||||||  || ||||||| ||||| ||||   ||||||| ||||||||||  ||||||||||||||| || ||||   ||||| || | |||||    
T  24202507 gcacaagaacact-taaatactagccttcctctgatacaatcgtgtcacgatttcc--agatcgtgtcacgatttg-aacgtgcgtcccaagatatgacc 24202412  T
Q  166 agtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||  |||||||||| |||||||||   ||||||||||||||||    
T  24202411 agtccttatcaaggatacttaacgagcaagtttgaaaatcgtgtcacgattt 24202360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 9036187 - 9036132
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  9036187 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 9036132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 9987062 - 9986912
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatc--tgcaacggtccccaggt-tgacca 166  Q
    ||||||||||||  || ||||||| | ||| ||||  |||| ||| ||||||||||  |||||||||||||||   |||| | ||||| |||| ||||||    
T  9987062 gcacaagaacact-taaatactagccctccactgataaaattgtgtcacgatttcc--agatcgtgtcacgattggtgcatccgtcccaaggtatgacca 9986966  T
Q  167 gtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||| |  || ||||||| |||||||||   |||||||||||||||||||    
T  9986965 gtccttattatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttccc 9986912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 9036277 - 9036204
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgc 146  Q
    ||||||||||||  | |||||||||||||| |||  ||||||||| |||||||| || | |||||||||||||||||    
T  9036277 gcacaagaacac--tttatactagtcttcctctgttgaaatcgtgtcacgattttccca-atcgtgtcacgatctgc 9036204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 21053726 - 21053666
Alignment:
Q  161 tgaccagtccttatcagtgatacttaaccagcaagttt-ctgaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||  || ||||||| ||||||||| |  |||||||||||||||||||    
T  21053726 tgaccagtccttatcatggaaacttaacgagcaagtttgcacaatcgtgtcacgatttccc 21053666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 40282200 - 40282088
Alignment:
Q  107 aaatcgtgccacgatttccctagatcgtgtcacgatc--tgcaacggtccccaggt-tgaccagtccttatcagtgatacttaaccagcaagttt-ctga 202  Q
    |||||||| ||||||||||   ||||||||||||||   |||| | ||||| |||| ||||||||||||||||  || ||||||| ||||||||| |  |    
T  40282200 aaatcgtgtcacgatttcct--gatcgtgtcacgattggtgcatccgtcccaaggtatgaccagtccttatcatggaaacttaacgagcaagtttgcaca 40282103  T
Q  203 atcgtgtcacgattt 217  Q
    |||||||||||||||    
T  40282102 atcgtgtcacgattt 40282088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 6438738 - 6438957
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  6438738 ccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtccttcc 6438837  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  6438838 ctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacggttcccaggttgaccagtccttatcagtgatacttaactagcaagtttct 6438937  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||    
T  6438938 gaatcgtgtcacgatttccc 6438957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28155417 - 28155197
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtctt-caaaaaagcacaagaacacaatatatactagtcttcc 99  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||| |||    
T  28155417 ccccataggatcccctctttgatctccaagttttctctcttaagttctcttaaggttttttttcaaaaaagcacaagaacacaatatatactagtcctcc 28155318  T
Q  100 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 199  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28155317 cctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagagatacttaaccagcaagtttc 28155218  T
Q  200 tgaatcgtgtcacgatttccc 220  Q
    || ||||||||||||||||||    
T  28155217 tggatcgtgtcacgatttccc 28155197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 16838985 - 16839204
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||||||||||||  |||||||||||| | ||    
T  16838985 ccccaaaggatcccatctttgatctccaagttttctctcttaagctctctcaaggttctctccaaaaaagcacaagaacactttatatactagtcctgcc 16839084  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  16839085 ctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacggtcccaaggttgaccagtccttatcagagatacttaaccagcaagtttct 16839184  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||    
T  16839185 gaatcgtgtcacgatttccc 16839204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 6005658 - 6005880
Alignment:
Q  1 ccccataggatcccc-tctttgatctctaagttttctctcttaagctctcttaaggttgtcttc--aaaaaagcacaagaacacaatatatactagtctt 97  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| | |||  ||||||||||||||||||  || ||||||||| |    
T  6005658 ccccaaaggatccccatctttgatctccaagttttctctcttaagctctcttaaggtttttttccaaaaaaagcacaagaacactttaaatactagtcct 6005757  T
Q  98 cccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtt 197  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6005758 gccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagagatacttaaccagcaagtt 6005857  T
Q  198 tctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||||    
T  6005858 tctgaatcgtgtcacgatttccc 6005880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 33330289 - 33330059
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctct-----------taaggttgtcttcaaaaaagcacaagaacacaatatata 89  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| |||||           |||||||||||||||||||||||||||||||  || |||    
T  33330289 ccccaaaggatcccctctttgatctccaagttttctctcttaagttctctcaaggttgtcttaaggttgtcttcaaaaaagcacaagaacactttaaata 33330190  T
Q  90 ctagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaacc 189  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33330189 ctagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagagatacttaacc 33330090  T
Q  190 agcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||||||||||||    
T  33330089 agcaagtttctgaatcgtgtcacgatttccc 33330059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 33335786 - 33335556
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctct-----------taaggttgtcttcaaaaaagcacaagaacacaatatata 89  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| |||||           |||||||||||||||||||||||| ||||||  || |||    
T  33335786 ccccaaaggatcccctctttgatctccaagttttctctcttaagttctctcaaggttgtcttaaggttgtcttcaaaaaagcacatgaacactttaaata 33335687  T
Q  90 ctagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaacc 189  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33335686 ctagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagagatacttaacc 33335587  T
Q  190 agcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||||||||||||    
T  33335586 agcaagtttctgaatcgtgtcacgatttccc 33335556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5343718 - 5343938
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtc-ttcaaaaaagcacaagaacacaatatatactagtcttcc 99  Q
    ||||| |||||||| |||||||| || ||||||||||||||||| ||||| ||||||  | ||||||  |||||||||||||  ||||||||||||   |    
T  5343718 ccccaaaggatcccatctttgatatccaagttttctctcttaagttctctcaaggttaaccttcaaatgagcacaagaacactttatatactagtccagc 5343817  T
Q  100 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  5343818 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatatgcaacggtccccaagttgaccagtccttatcagagatacttaaccagcaagtttc 5343917  T
Q  200 tgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||    
T  5343918 tgaatcgtgtcacgatttccc 5343938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 63 - 217
Target Start/End: Complemental strand, 14737349 - 14737195
Alignment:
Q  63 caaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  14737349 caaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggacccaaggttg 14737250  T
Q  163 accagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14737249 acaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgattt 14737195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 63 - 217
Target Start/End: Complemental strand, 14742209 - 14742055
Alignment:
Q  63 caaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttg 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||    
T  14742209 caaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccttagatcgtgtcacgatctgcaacggacccaaggttg 14742110  T
Q  163 accagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14742109 acaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgattt 14742055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 22010493 - 22010315
Alignment:
Q  42 aagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 141  Q
    ||||||||||||| |  |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  22010493 aagctctcttaagttcttcttcaaaaaagcacaagaacacaatatatactagtctccctctgaagaaatcgtgccacgatttccctagatcgtgtcacga 22010394  T
Q  142 tctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    | |||||||| ||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22010393 tttgcaacggacccaaggtagacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 22010315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 11857286 - 11857441
Alignment:
Q  64 aaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 163  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||||| ||| |||||||    
T  11857286 aaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttcccaa-atcgtgtcacgatttgcaacggacccaaggttga 11857384  T
Q  164 ccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    | |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  11857385 caagtccttatcagtgttacttaacgagcaagtttctaaatcgtgtcacgatttccc 11857441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 5674505 - 5674356
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccagt 168  Q
    ||||||||||||  || ||||||| ||||| ||||   ||||||| ||||||||||  ||||||||||||||| |||    ||||| |||| ||||||||    
T  5674505 gcacaagaacactttaaatactagccttcctctgatacaatcgtgtcacgatttcc--agatcgtgtcacgatttgcgtacgtcccaaggtatgaccagt 5674408  T
Q  169 ccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||  |||||||||| ||||||||||  |||||||||||||||||||    
T  5674407 ccttatcacggatacttaacgagcaagtttcaaaatcgtgtcacgatttccc 5674356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 5266487 - 5266546
Alignment:
Q  161 tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||  |||||||||  |||||||||||||||||||||||||||||||    
T  5266487 tgaccagtccttatcaaggatacttaatgagcaagtttctgaatcgtgtcacgatttccc 5266546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 6136363 - 6136421
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||    
T  6136363 gaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgatttccc 6136421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 33342503 - 33342561
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| |||||||||||  ||||||||||||||||||    
T  33342503 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgatttccc 33342561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 30125185 - 30125144
Alignment:
Q  179 gatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  30125185 gatacttaacgagcaagtttctgaatcgtgtcacgatttccc 30125144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 5266418 - 5266469
Alignment:
Q  72 acaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgattt 123  Q
    |||||||||||| ||||||||||||||| |||||| ||||||| ||||||||    
T  5266418 acaagaacacaaaatatactagtcttcctctgaagcaatcgtgtcacgattt 5266469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 6027018 - 6026963
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||| ||||||||||  |||||||||| |||||||||||| |||||||||||||||    
T  6027018 gaccggtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgattt 6026963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 13151034 - 13150979
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  13151034 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 13150979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 34164629 - 34164574
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  34164629 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 34164574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 34166851 - 34166796
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  34166851 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 34166796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 16554638 - 16554583
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  16554638 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 16554583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 16578917 - 16578972
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  16578917 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 16578972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 16616463 - 16616408
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  16616463 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 16616408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 16631194 - 16631139
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  16631194 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 16631139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 25420981 - 25420926
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  25420981 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 25420926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 25421075 - 25421020
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  25421075 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 25421020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 3073157 - 3073215
Alignment:
Q  161 tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttcc 219  Q
    ||||||||||||||||  || ||||||| |||||||||   ||||||||||||||||||    
T  3073157 tgaccagtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttcc 3073215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 16554720 - 16554655
Alignment:
Q  80 acaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgc 146  Q
    ||||| |||||||| ||||| |||  ||||||||| ||||||||||| | |||||||||||||||||    
T  16554720 acaatttatactagccttcctctgttgaaatcgtgtcacgatttccc-aaatcgtgtcacgatctgc 16554655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 16631276 - 16631211
Alignment:
Q  80 acaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgc 146  Q
    ||||| |||||||| ||||| |||  ||||||||| ||||||||||| | |||||||||||||||||    
T  16631276 acaatttatactagccttcctctgttgaaatcgtgtcacgatttccc-aaatcgtgtcacgatctgc 16631211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 16652963 - 16652898
Alignment:
Q  80 acaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgc 146  Q
    ||||| |||||||| ||||| |||  ||||||||| ||||||||||| | |||||||||||||||||    
T  16652963 acaatttatactagccttcctctgttgaaatcgtgtcacgatttccc-aaatcgtgtcacgatctgc 16652898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 22709460 - 22709518
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  || ||||||| |||||||||   |||||||||||||||||||    
T  22709460 gaccagtccttatcatggaaacttaacgagcaagtttgaaaatcgtgtcacgatttccc 22709518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 411872 - 411812
Alignment:
Q  161 tgaccagtccttatcagtgatacttaaccagcaagttt-ctgaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||  || ||||||| ||||||||| |  |||||||||||||||||||    
T  411872 tgaccagtccttatcatggaaacttaacgagcaagtttgcacaatcgtgtcacgatttccc 411812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 600 - 819
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  600 ccccataggatcccctctttgatctccaagatttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatataccagtcctccc 699  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||  || | ||||||||||||||||||| ||||||||||||||||||||||    
T  700 ctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgcaacggaaccaaagttgaccagtccttatcagagatacttaaccagcaagtttct 799  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||    
T  800 gaatcgtgtcacgatttccc 819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28807421 - 28807202
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| | ||    
T  28807421 ccccaaaggatcccctctttgatctccaagttttctctcttaagctctcttaaggttctcttcaaaaaagcacaagaacataatatatactagtcctgcc 28807322  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  28807321 ctgaagaaatcgtgccacgagttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagagatacttaaccaacaagtttct 28807222  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    | ||||||||||||||||||    
T  28807221 ggatcgtgtcacgatttccc 28807202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 37561292 - 37561073
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||| | ||    
T  37561292 ccccataggatcccctctttgatctccaagttttctctcttaagccatcttaaggttctcttcaaaaaagcacaagaacacaatatatactagtcctgcc 37561193  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  37561192 ctgaagaaatcgtgccacgatttccctagatcatgtcacgatctgcaacggtccccaggttaaccagtccttatcagagatacttaaccagcaagtttct 37561093  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    | ||||||||||||||||||    
T  37561092 ggatcgtgtcacgatttccc 37561073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33768425 - 33768645
Alignment:
Q  1 ccccataggatcccc-tctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcc 99  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||  || ||||||||| | |    
T  33768425 ccccaaaggatccccatctttgatctccaagttttctctcttaagctctcttaaggttatctccaaaaaagcacaagaacactttaaatactagtcatgc 33768524  T
Q  100 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33768525 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagagatacttaaccagcaagtttc 33768624  T
Q  200 tgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||    
T  33768625 tgaatcgtgtcacgatttccc 33768645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33791557 - 33791777
Alignment:
Q  1 ccccataggatcccc-tctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcc 99  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||  || ||||||||| | |    
T  33791557 ccccaaaggatccccatctttgatctccaagttttctctcttaagctctcttaaggttatctccaaaaaagcacaagaacactttaaatactagtcctgc 33791656  T
Q  100 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33791657 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagagatacttaaccagcaagtttc 33791756  T
Q  200 tgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||    
T  33791757 tgaatcgtgtcacgatttccc 33791777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2785616 - 2785836
Alignment:
Q  1 ccccataggatcccc-tctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcc 99  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||  || ||||||||| | |    
T  2785616 ccccaaaggatccccatctttgatctccaagttttctctcttaagctctcttaaggttatctccaaaaaagcacaagaacactttaaatactagtcctgc 2785715  T
Q  100 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  2785716 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacgctccccaggttgaccagtccttatcagagatacttaaccagcaagtttc 2785815  T
Q  200 tgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||    
T  2785816 tgaatcgtgtcacgatttccc 2785836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 37556470 - 37556251
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||| | ||    
T  37556470 ccccataggatcccctctttgatctccaagttttctctcttaagccatcttaaggttctcttcaaaaaagcacaagaacacaatatatactagtcctgcc 37556371  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||||    
T  37556370 ctgaagaaatcgtgccatgatttccctagatcgtgtcacgatctgcaacggtcctctggttaaccagtccttatcagagatacttaaccagcaagtttct 37556271  T
Q  201 gaatcgtgtcacgatttccc 220  Q
      |||||||||| |||||||    
T  37556270 agatcgtgtcacaatttccc 37556251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31396835 - 31396616
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  || |||| |||| | ||    
T  31396835 ccccaaaggatcccatctttgatctccaagttttctctcttaagctctctcaaggttgtcttcaaaaaagcacaagaacactttaaatacaagtcctgcc 31396736  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||    
T  31396735 ctgaagaaatcgtgtcacgattaccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagagaaacttaaccaacaagtgtct 31396636  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||    
T  31396635 gaatcgtgtcacgatttccc 31396616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 15044976 - 15045154
Alignment:
Q  42 aagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 141  Q
    ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15044976 aagctctcttaagttcttcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 15045075  T
Q  142 tctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  15045076 tctgcaacggaccccaggttgaccagtccttatcagtgatacttaatgagcaagtttctgaatcgtgtcacgatttccc 15045154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31401692 - 31401473
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    ||||| |||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||  || |||| |||| | ||    
T  31401692 ccccaaaggatcccatctttgatctccaagttttgtctcttaagctctctcaaggttgtcttcaaaaaagcacaagaacactttaaatacaagtcctgcc 31401593  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||    
T  31401592 ctgaagaaatcgtgtcacgattaccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagagaaacttaagcagcaagtttct 31401493  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    ||||| ||||||||||||||    
T  31401492 gaatcatgtcacgatttccc 31401473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 64 - 220
Target Start/End: Complemental strand, 1456920 - 1456764
Alignment:
Q  64 aaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 163  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||| |||| | | ||| |||| ||    
T  1456920 aaaaaagcacaagaacacaatatatactagtcttcctctaaagaaatcgtgccacgatttcccaagaccgtgtcacgatttgcatctgacccaaggtaga 1456821  T
Q  164 ccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    | |||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  1456820 caagtccttatcagggatacttaacaagcaagtttctgaatcgtgtcacgatttccc 1456764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 31180568 - 31180723
Alignment:
Q  65 aaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgac 164  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||  | | ||| ||||||||    
T  31180568 aaaaagcacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcccaagatcatgtcacgatttgcgtctgacccaaggttgac 31180667  T
Q  165 cagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||||| || |||| |||||||||||||||||||||||    
T  31180668 cagtccttatcagtgatacttaacgagaaagtctctgaatcgtgtcacgatttccc 31180723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 27445285 - 27445440
Alignment:
Q  64 aaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 163  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  27445285 aaaaaagcacaagaacacaatatatactagccttcctctgaagcaatcgtgccacgatttcccaa-atcgtgtcacgatttgcgtctgacccaaggtaga 27445383  T
Q  164 ccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  27445384 ccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 27445440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 27450128 - 27450283
Alignment:
Q  64 aaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 163  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  27450128 aaaaaagcacaagaacacaatatatactagccttcctctgaagcaatcgtgccacgatttcccaa-atcgtgtcacgatttgcgtctgacccaaggtaga 27450226  T
Q  164 ccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  27450227 ccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 27450283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 43592591 - 43592746
Alignment:
Q  64 aaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 163  Q
    |||||||||||||||||||||||||||||| ||||| | |||| ||||||| ||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  43592591 aaaaaagcacaagaacacaatatatactagccttcctccgaagcaatcgtgtcacgatttcccaa-atcgtgtcacgatttgcgtctgacccaaggtaga 43592689  T
Q  164 ccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  43592690 ccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 43592746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 43599036 - 43599191
Alignment:
Q  64 aaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 163  Q
    |||||| ||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  43599036 aaaaaaacacaagaacacaatatatactagccttcctctgaagcaatcgtgtcacgatttcccaa-atcgtgtcacgatttgcgtctgacccaaggtaga 43599134  T
Q  164 ccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  43599135 ccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 43599191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 43604528 - 43604683
Alignment:
Q  64 aaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 163  Q
    |||||| ||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  43604528 aaaaaaacacaagaacacaatatatactagccttcctctgaagcaatcgtgtcacgatttcccaa-atcgtgtcacgatttgcgtctgacccaaggtaga 43604626  T
Q  164 ccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  43604627 ccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 43604683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 43610020 - 43610175
Alignment:
Q  64 aaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 163  Q
    |||||| ||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||| | ||||||||||||| |||  | | ||| |||| ||    
T  43610020 aaaaaaacacaagaacacaatatatactagccttcctctgaagcaatcgtgtcacgatttcccaa-atcgtgtcacgatttgcgtctgacccaaggtaga 43610118  T
Q  164 ccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  43610119 ccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 43610175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 24136201 - 24136357
Alignment:
Q  63 caaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-t 161  Q
    |||||| ||||||||||||  ||||||||||  |||| ||||   ||||||||||||||||||  ||||||||||||||| |||    ||||| |||| |    
T  24136201 caaaaatgcacaagaacactttatatactagctttcctctgatacaatcgtgccacgatttcc--agatcgtgtcacgatttgcgtacgtcccaaggtat 24136298  T
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| |||||||||   |||||||||||||||||||    
T  24136299 gaccagtccttatcaaggatacttaacgagcaagtttgaaaatcgtgtcacgatttccc 24136357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 30631762 - 30631822
Alignment:
Q  160 ttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  30631762 ttgaccagtccttatcagagatacttaacgagcaagtttctgaatcgtgtcacgatttccc 30631822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 29402728 - 29402676
Alignment:
Q  168 tccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29402728 tccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 29402676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 217
Target Start/End: Original strand, 29751458 - 29751615
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    ||||||| | ||||||||||||  |||||||||| ||||| || ||| ||||||| |||||||| || | ||||||||||||| |||      ||| |||    
T  29751458 cttcaaagatgcacaagaacactttatatactagccttcctctaaagcaatcgtgtcacgattttccaa-atcgtgtcacgatttgcgtacaacccaagg 29751556  T
Q  160 t-tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    | ||||||||||||||||  |||||||||| ||||||||||  ||||||||||||||||    
T  29751557 tatgaccagtccttatcaaggatacttaacgagcaagtttcacaatcgtgtcacgattt 29751615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 25077890 - 25077832
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||    
T  25077890 gaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgatttccc 25077832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 25135859 - 25135801
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||    
T  25135859 gaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgatttccc 25135801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 35388022 - 35388169
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacg---gtccccaggt-tgacc 165  Q
    ||||||||||||  || ||||||| ||||| ||||  |||||||| ||||||||||  ||||||||||||||| || ||||   ||||| |||| |||||    
T  35388022 gcacaagaacact-taaatactagccttcctctgataaaatcgtgtcacgatttcc--agatcgtgtcacgatttg-aacgtacgtcccaaggtatgacc 35388117  T
Q  166 agtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||  |||||||||| |||||||||   ||||||||||| ||||    
T  35388118 agtccttatcaaggatacttaacgagcaagtttgaaaatcgtgtcacaattt 35388169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 22536668 - 22536726
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| ||||||||||   ||||||||||||||||||    
T  22536668 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttccc 22536726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 10593118 - 10593044
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgc 146  Q
    ||||||||||||  || ||||||||||||| |||  ||||||||| ||||||||||| | |||||||||||||||||    
T  10593118 gcacaagaacact-tacatactagtcttcctctgttgaaatcgtgtcacgatttccc-aaatcgtgtcacgatctgc 10593044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 10593027 - 10592972
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  10593027 gaccagtccttatcacggatacttaacgagcaagtttcacgatcgtgtcacgattt 10592972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 16544178 - 16544123
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  16544178 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 16544123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 16546400 - 16546345
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  16546400 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 16546345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 40379862 - 40379807
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  40379862 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 40379807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 40382073 - 40382018
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  40382073 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 40382018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 9789624 - 9789682
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  || ||||||| |||||||||   |||||||||||||||||||    
T  9789624 gaccagtccttatcatggaaacttaacgagcaagttttcaaatcgtgtcacgatttccc 9789682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 18442048 - 18442106
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  || ||||||| |||||||||   |||||||||||||||||||    
T  18442048 gaccagtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttccc 18442106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 26177651 - 26177593
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  || ||||||| |||||||||   |||||||||||||||||||    
T  26177651 gaccagtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttccc 26177593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 29720152 - 29720092
Alignment:
Q  161 tgaccagtccttatcagtgatacttaaccagcaagttt-ctgaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||  || ||||||| ||||||||| |  |||||||||||||||||||    
T  29720152 tgaccagtccttatcatggaaacttaacgagcaagtttgcacaatcgtgtcacgatttccc 29720092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 32247026 - 32247244
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaa--gcacaagaacacaatatatactagtcttc 98  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||  |||||||||||||||||||||||||| ||    
T  32247026 ccccataggaccccctctttgatctccaagttttctctcttaagttctcttaaggttatcttcaaaaaaaggcacaagaacacaatatatactagtcctc 32247125  T
Q  99 ccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagttt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  32247126 ccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtctttatcagtgatacttaacgagcaagttt 32247225  T
Q  199 ctgaatcgtgtcacgattt 217  Q
    |||||||||| ||||||||    
T  32247226 ctgaatcgtgccacgattt 32247244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19344663 - 19344883
Alignment:
Q  1 ccccataggatcccc-tctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcc 99  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||  || ||||||||| | |    
T  19344663 ccccaaaggatccccatctttgatctccaagttttctctcttaagctctcttaaggttatctccaaaaaagcacaagaacactttaaatactagtcctgc 19344762  T
Q  100 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 199  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19344763 cctgaagaaatcgtgccacgatttccctagatcgtgtcatgatctgcaacggtccccaggttgaccagtccttatcagagatacttaaccagcaagtttc 19344862  T
Q  200 tgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||    
T  19344863 tgaatcgtgtcacgatttccc 19344883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19349521 - 19349741
Alignment:
Q  1 ccccataggatcccc-tctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcc 99  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  || ||||||||| | |    
T  19349521 ccccaaaggatccccatctttgatctctaagttttctctcttaagctctcttaaggttatctccaaaaaagcacaagaacactttaaatactagtcctgc 19349620  T
Q  100 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  19349621 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtcctcaggttgaccagtccttatcagagatacttaaccaacaagtttc 19349720  T
Q  200 tgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||    
T  19349721 tgaatcgtgtcacgatttccc 19349741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 39811763 - 39811603
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  39811763 cttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggccccaagg 39811664  T
Q  160 ttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
      ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39811663 cagacaagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 39811603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 14291850 - 14291999
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccagt 168  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||| |||      ||| |||| ||||||||    
T  14291850 gcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttcc--agatcgtgtcacgatttgcgtacaacccaaggtatgaccagt 14291947  T
Q  169 ccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  14291948 ccttatcagtggtacttaacgagcaagtttctgaatcgtgtcacgatttccc 14291999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 11098662 - 11098513
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg-ttgaccagt 168  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||  ||||||||||||||| |||      ||| ||| |||||||||    
T  11098662 gcacaagaacacaatatatgctagtcttcctctgaagaaatcgtgccacgatttcc--agatcgtgtcacgatttgcgtacaacccaaggtttgaccagt 11098565  T
Q  169 ccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  11098564 ccttatcagtgatacttaacgagcaagtttctaaatcgtgtcacgatttccc 11098513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 9296144 - 9295988
Alignment:
Q  63 caaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-t 161  Q
    |||||||||||||||||||  || ||||||||||||| |||||| ||||||| |||||||| |  ||||||||||||||| |||  | | ||| |||| |    
T  9296144 caaaaaagcacaagaacactttaaatactagtcttcctctgaagcaatcgtgtcacgattttc--agatcgtgtcacgatttgcgtccgacccaaggtat 9296047  T
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||  |||||||||||||||||||||||||||||||    
T  9296046 gaccagtccttatcaaggatacttaatgagcaagtttctgaatcgtgtcacgatttccc 9295988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 12647783 - 12647841
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| ||||||||| || ||||||||||||||||||    
T  12647783 gaccagtccttatcaaggatacttaacgagcaagtttatggatcgtgtcacgatttccc 12647841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 3492212 - 3492250
Alignment:
Q  182 acttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  3492212 acttaacgagcaagtttcagaatcgtgtcacgatttccc 3492250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 25410081 - 25410139
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||| |||||||||  |||||||||| |||||||||   |||||||||||||||||||    
T  25410081 gaccattccttatcaaggatacttaacgagcaagtttgaaaatcgtgtcacgatttccc 25410139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 18656672 - 18656902
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctct-----------taaggttgtcttcaaaaaagcacaagaacacaatatata 89  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||           |||||||||||||||||||||||||||||||  || |||    
T  18656672 ccccataggatcccctctttgatctccaagttttctctcttaagttctctcaaggttgtcttaaggttgtcttcaaaaaagcacaagaacactttaaata 18656771  T
Q  90 ctagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaacc 189  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18656772 ctagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaacc 18656871  T
Q  190 agcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||||||||||||    
T  18656872 agcaagtttctgaatcgtgtcacgatttccc 18656902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2672775 - 2672545
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtctt-----------caaaaaagcacaagaacacaatatata 89  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||           |||||||||||||||||||  || |||    
T  2672775 ccccaaaggatcccctctttgacctccaagttttctctcttaagttctctcaaggttgtcttaaggttctcttcaaaaaagcacaagaacactttaaata 2672676  T
Q  90 ctagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaacc 189  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2672675 ctagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagagatacttaacc 2672576  T
Q  190 agcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||||||||||||    
T  2672575 agcaagtttctgaatcgtgtcacgatttccc 2672545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2676931 - 2676701
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtctt-----------caaaaaagcacaagaacacaatatata 89  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||           |||||||||||||||||||  || |||    
T  2676931 ccccaaaggatcccctctttgacctccaagttttctctcttaagttctctcaaggttgtcttaaggttctcttcaaaaaagcacaagaacactttaaata 2676832  T
Q  90 ctagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaacc 189  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  2676831 ctagtcctgccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagagattcttaacc 2676732  T
Q  190 agcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||||||||||||    
T  2676731 agcaagtttctgaatcgtgtcacgatttccc 2676701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 24968348 - 24968578
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtctt-----------caaaaaagcacaagaacacaatatata 89  Q
    ||||| |||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||||           |||| ||||||||||||||  || |||    
T  24968348 ccccaaaggatcccctctttgatctccaagttatctctcttgagctctctcaagattgtcttaagccccctttcaaataagcacaagaacactttaaata 24968447  T
Q  90 ctagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaacc 189  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| || ||||||||    
T  24968448 ctagtcttgccctgaagaaatcgtgccacgatttccctagatcgtggcacgatttgcaacggtccccaggttgaccagtccttatcagagaaacttaacc 24968547  T
Q  190 agcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||||||||||||    
T  24968548 agcaagtttctgaatcgtgtcacgatttccc 24968578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 32475725 - 32475945
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtc-ttcaaaaaagcacaagaacacaatatatactagtcttcc 99  Q
    ||||| |||||||| ||||||||||| |||||| |||||||||| ||||| ||||||  | ||||||  |||||||||||||  || ||||||||| | |    
T  32475725 ccccaaaggatcccatctttgatctccaagtttcctctcttaagttctctcaaggttaaccttcaaatgagcacaagaacactttaaatactagtcctgc 32475824  T
Q  100 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 199  Q
    || |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||    
T  32475825 ccagaagaaatcgtgccacgatttccctagatcgtgtcacgatatgcaacggtccccaagatgaccagtccttatcagagatacttaaccagcaagtttc 32475924  T
Q  200 tgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||    
T  32475925 tgaatcgtgtcacgatttccc 32475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 32480583 - 32480803
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtc-ttcaaaaaagcacaagaacacaatatatactagtcttcc 99  Q
    ||||| |||||||| ||||||||||| |||||| |||||||||| ||||| ||||||  | ||||||  |||||||||||||  || ||||||||| | |    
T  32480583 ccccaaaggatcccatctttgatctccaagtttcctctcttaagttctctcaaggttaaccttcaaatgagcacaagaacactttaaatactagtcctgc 32480682  T
Q  100 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 199  Q
    |  |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||    
T  32480683 ctagaagaaatcgtgccacgatttccctagatcgtgtcacgatatgcaacggtccccaagatgaccagtccttatcagagatacttaaccagcaagtttc 32480782  T
Q  200 tgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||    
T  32480783 tgaatcgtgtcacgatttccc 32480803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 8512527 - 8512701
Alignment:
Q  46 tctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctg 145  Q
    ||||||||||||  |||||||| |||||||||||||  || ||||||||| |  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  8512527 tctcttaaggttaccttcaaaagagcacaagaacactttaaatactagtcctgtcctgaggaaatcgtgccacgatttccctagatcgtgtcacgatctg 8512626  T
Q  146 caacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8512627 caacggtccccaagttgaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttccc 8512701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 8517407 - 8517581
Alignment:
Q  46 tctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctg 145  Q
    ||||||||||||  |||||||| |||||||||||||  || ||||||||| |  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  8517407 tctcttaaggttaccttcaaaagagcacaagaacactttaaatactagtcctgtcctgaggaaatcgtgccacgatttccctagatcgtgtcacgatctg 8517506  T
Q  146 caacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8517507 caacggtccccaagttgaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttccc 8517581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 28503605 - 28503445
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |||  | | ||| |||    
T  28503605 cttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcccaagatcgtgtcacgatttgcgtctgacccaagg 28503506  T
Q  160 ttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||| |||||||||||||||    
T  28503505 ttgacaagtccttatcagggatacttaacgagcaagtttctgaattgtgtcacgatttccc 28503445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 60 - 217
Target Start/End: Complemental strand, 28501438 - 28501281
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||| |||  | | ||| |||    
T  28501438 cttcaaaaaagcacaagtacacaatatatactagtcttcctctgaagcaatcgtgccacgatttcccaagatcgtgtcatgatttgcgtctgacccaagg 28501339  T
Q  160 ttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  28501338 ttgacaagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgattt 28501281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 8738808 - 8738649
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||  ||||| ||||||||| |||  | || || |||    
T  8738808 cttcaaaaaagcacaagaacacaatatatactagacttcctctgaagcaatcgtgccacgatttcc--agatcatgtcacgatttgcgtccgttccaagg 8738711  T
Q  160 t-tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    | ||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  8738710 tatgaccagtccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 8738649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 9091046 - 9090887
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||  ||||| ||||||||| |||  | || || |||    
T  9091046 cttcaaaaaagcacaagaacacaatatatactagacttcctctgaagcaatcgtgccacgatttcc--agatcatgtcacgatttgcgtccgttccaagg 9090949  T
Q  160 t-tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    | ||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  9090948 tatgaccagtccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 9090887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 7167607 - 7167756
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccagt 168  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |  | ||||||||||||| |||  | | ||| |||| ||||||||    
T  7167607 gcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccatgattttc--aaatcgtgtcacgatttgcgtctgacccaaggtatgaccagt 7167704  T
Q  169 ccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7167705 ccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 7167756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 40372531 - 40372382
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccagt 168  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||| |||||| |||  | || ||||||| ||||||||    
T  40372531 gcacaagaacacaatatatactagtcttcctctgaagaaatcgtgtcacgatttcc--agatcgtggcacgatttgcgtccgttcccaggtatgaccagt 40372434  T
Q  169 ccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  40372433 ccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 40372382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 27352356 - 27352207
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccagt 168  Q
    |||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||  | ||||||||||||| |||  | ||||| |||| ||||||||    
T  27352356 gcacaagaacacaatatatattagccttcctctgaagcaatcgtgccacgatttcc--aaatcgtgtcacgatttgcgtccgtcccaaggtatgaccagt 27352259  T
Q  169 ccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  27352258 ccttatcagtgataattaacgagcaagtttctgaatcgtgtcacgatttccc 27352207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 22172968 - 22172788
Alignment:
Q  59 tcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctag-------------------atcgtgtcac 139  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |                    ||||||||||    
T  22172968 tcttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttcccaaatcgtgccacgatttcccaaatcgtgtcac 22172869  T
Q  140 gatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||| ||||||||  || ||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||    
T  22172868 gatttgcaacggaaccaaggttgaccagtccttatcagagatccttaacgagcaagtttctgaatcgtgtcacgatttccc 22172788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 8477744 - 8477876
Alignment:
Q  87 atactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccagtccttatcagtgatactt 185  Q
    ||||||| ||||| |||||| ||||||| ||||||||||  ||||||||||||||| |||      ||| |||| ||||||||||||||||  |||||||    
T  8477744 atactagccttcctctgaagcaatcgtgtcacgatttcc--agatcgtgtcacgatttgcgtacaacccaaggtatgaccagtccttatcaaggatactt 8477841  T
Q  186 aaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||| ||||||||||| |||||||||||||||||||    
T  8477842 aacgagcaagtttctcaatcgtgtcacgatttccc 8477876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 2671321 - 2671268
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgattt 123  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  2671321 gcacaagaacacaatatatactagtcttcctctgaagaaatcgtgtcacgattt 2671268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 2671250 - 2671191
Alignment:
Q  161 tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||  |||||||||| ||||||||||| |||||||||||||||||||    
T  2671250 tgaccagtccttatcaaggatacttaacgagcaagtttctaaatcgtgtcacgatttccc 2671191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 4598922 - 4598980
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| |||||||||||  ||||||||||||||||||    
T  4598922 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgatttccc 4598980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 4601143 - 4601201
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| |||||||||||  ||||||||||||||||||    
T  4601143 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgatttccc 4601201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 10055990 - 10055935
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  10055990 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 10055935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 10058212 - 10058157
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  10058212 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 10058157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 10060434 - 10060379
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  10060434 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 10060379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 10062656 - 10062601
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  10062656 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 10062601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 10064878 - 10064823
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  10064878 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 10064823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 10067100 - 10067045
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  10067100 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 10067045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 6716269 - 6716211
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| ||||||||||   ||||||||||||||||||    
T  6716269 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttccc 6716211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 6718453 - 6718395
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| ||||||||||   ||||||||||||||||||    
T  6718453 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttccc 6718395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 25637197 - 25637139
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| ||||||||||   ||||||||||||||||||    
T  25637197 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttccc 25637139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 54634894 - 54634836
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| ||||||||||   ||||||||||||||||||    
T  54634894 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttccc 54634836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 10208963 - 10208908
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||| ||||| |||||||||||  |||||||||||||||    
T  10208963 gaccagtccttatcaaggatatttaacgagcaagtttcttgatcgtgtcacgattt 10208908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 10211163 - 10211108
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||  ||||||||| |||||    
T  10211163 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcatgattt 10211108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 45282750 - 45282695
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  45282750 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 45282695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8512458 - 8512498
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctctt 41  Q
    ||||| |||||||||||||||||||| ||||| ||||||||    
T  8512458 ccccaaaggatcccctctttgatctccaagttatctctctt 8512498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8517338 - 8517378
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctctt 41  Q
    ||||| |||||||||||||||||||| ||||| ||||||||    
T  8517338 ccccaaaggatcccctctttgatctccaagttatctctctt 8517378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 19009 - 18790
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  || ||| ||||| | ||    
T  19009 ccccaaaggatcccatctttgatctccaagttttctctcttaagttctctcaaggttgtcttcaaaaaagcacaagaacactttaaatattagtcctgcc 18910  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||    
T  18909 ctgaagaaatcgtgccacgatttccttagatcgtgtcacgatttgcaacggtccccaggatgaccagtctttatcagagatacttaaccagcaagtttct 18810  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||    
T  18809 gaatcgtgtcacgatttccc 18790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 14084 - 13910
Alignment:
Q  46 tctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctg 145  Q
    ||||||||||||  |||||||| |||||||||||||  || ||||||||| |  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  14084 tctcttaaggttaccttcaaaagagcacaagaacactttaaatactagtcctgtcctgaggaaatcgtgccacgatttccctagatcgtgtcacgatctg 13985  T
Q  146 caacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13984 caacggtccccaagttgaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttccc 13910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14153 - 14113
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctctt 41  Q
    ||||| |||||||||||||||||||| ||||| ||||||||    
T  14153 ccccaaaggatcccctctttgatctccaagttatctctctt 14113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 21812084 - 21811865
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    ||||| |||||||||||||||| ||| ||| ||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||| | ||    
T  21812084 ccccaaaggatcccctctttgacctccaagctttctctcttaagttctcttaaggttagcttcaaaaaagcacaagaacacaatatatactagtcctgcc 21811985  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    ||||  |||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||    
T  21811984 ctgagtaaatcgtgccacgatttcccaagatcgtgacacaatctgcaacggtctccaggttgaccagtccttatcagagatacttaactagcaagtttct 21811885  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    | ||||||||||||||||||    
T  21811884 ggatcgtgtcacgatttccc 21811865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 24024103 - 24023945
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24024103 cttcaaaaaagcacaagaacac--tatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 24024006  T
Q  160 ttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24024005 ttgaccagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 24023945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 31109372 - 31109197
Alignment:
Q  45 ctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatct 144  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31109372 ctctcttaagtttatcttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttccctagatcgtgtcacgatct 31109273  T
Q  145 gcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||| ||| |||  ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31109272 gcaacggccccaaggcagacaagtccttatcagttatacttaaccagcaagtttctgaatcgtgtcacgatttccc 31109197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 16880314 - 16880534
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtc-ttcaaaaaagcacaagaacacaatatatactagtcttcc 99  Q
    ||||| |||||||| ||||||||||| |||||| |||||||||| ||||| ||||||  | ||||||  |||||||||||||  || ||||||||| | |    
T  16880314 ccccaaaggatcccatctttgatctccaagtttcctctcttaagttctctcaaggttaaccttcaaatgagcacaagaacactttaaatactagtcctgc 16880413  T
Q  100 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 199  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  16880414 ccagaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagagaaacttaaccagcaagtttc 16880513  T
Q  200 tgaatcgtgtcacgatttccc 220  Q
    ||||||||||||| |||||||    
T  16880514 tgaatcgtgtcacaatttccc 16880534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 16885170 - 16885389
Alignment:
Q  2 cccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtc-ttcaaaaaagcacaagaacacaatatatactagtcttccc 100  Q
    |||| |||||||| ||||||||||| |||||| |||||||||| ||||| ||||||  | ||||||  |||||||||||||  || ||||||||| | ||    
T  16885170 cccaaaggatcccatctttgatctccaagtttcctctcttaagttctctcaaggttaaccttcaaatgagcacaagaacactttaaatactagtcctgcc 16885269  T
Q  101 ctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttct 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  16885270 cagaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagagaaacttaaccagcaagtttct 16885369  T
Q  201 gaatcgtgtcacgatttccc 220  Q
    |||||||||||| |||||||    
T  16885370 gaatcgtgtcacaatttccc 16885389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 4873417 - 4873595
Alignment:
Q  42 aagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 141  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4873417 aagctctcttaagttcttcttcaaaaaagcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttccctagatcgtgtcacga 4873516  T
Q  142 tctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    | |||||||| ||| |||  ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  4873517 tttgcaacggacccaaggaagacaagtccttatcagtgatacttaacgagcaagtttctgaattgtgtcacgatttccc 4873595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 46 - 220
Target Start/End: Complemental strand, 24265977 - 24265803
Alignment:
Q  46 tctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctg 145  Q
    ||||||||||||  |||||||| |||||||||||||  || ||||||||| |  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  24265977 tctcttaaggttaccttcaaaagagcacaagaacactttaaatactagtcctgtcctgaggaaatcgtgccacgatttccctagatcgtgtcacgatctg 24265878  T
Q  146 caacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24265877 caacggtccccaagttgaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttccc 24265803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 24261167 - 24260947
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagctctcttaaggttgtc-ttcaaaaaagcacaagaacacaatatatactagtcttcc 99  Q
    ||||| |||||||| ||||||||||| |||||| |||||||||| ||||| ||||||  | ||||||  |||||||||||||  || ||||||||| |      
T  24261167 ccccaaaggatcccatctttgatctccaagtttcctctcttaagttctctcaaggttaaccttcaaatgagcacaagaacactttaaatactagtcctgt 24261068  T
Q  100 cctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttc 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||||||||| |||||||||||||||||||||    
T  24261067 cctgatgaaatcgtgccacgatttccctagatcgtgtcacgattttcaacggtcctcaagttgaccagtccttatcagagatacttaaccagcaagtttc 24260968  T
Q  200 tgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||    
T  24260967 tgaatcgtgtcacgatttccc 24260947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 12397200 - 12397379
Alignment:
Q  42 aagctctcttaaggttgtcttcaaaaaag-cacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacg 140  Q
    ||||||||||||| |  |||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||||    
T  12397200 aagctctcttaagttcttcttcaaaaaaggcacaagaacacaatatatactagtattcctctgaagaaatcgtgccacgatttccccaaatcgtgtcacg 12397299  T
Q  141 atctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    || |||||||| ||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12397300 atttgcaacggacccaaggtagacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 12397379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 80 - 220
Target Start/End: Original strand, 12406591 - 12406731
Alignment:
Q  80 acaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttgaccagtccttatcagtg 179  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||||| ||| |||| ||| ||||||||||||||    
T  12406591 acaatatatactagtcttcctctgaagaaatcgtgccacgatttccccaaatcgtgtcacgatttgcaacggacccaaggtagacaagtccttatcagtg 12406690  T
Q  180 atacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  12406691 atacttaacgagcaagtttctgaatcgtgtcacgatttccc 12406731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 2058330 - 2058479
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccagt 168  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||  ||||||||||||||| |||      ||| |||| ||||||||    
T  2058330 gcacaagaacacaatatatactagccttcctctgaagcaatcgtgccacgatttcc--agatcgtgtcacgatttgcgtacaacccaaggtatgaccagt 2058427  T
Q  169 ccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  2058428 ccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttccc 2058479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 1533177 - 1533030
Alignment:
Q  72 acaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggt-tgaccagtcc 170  Q
    |||||||||| ||||||||||| ||||| |||||| ||||||||||||||||||  ||||||||||||||| ||     ||||| |||| | ||||||||    
T  1533177 acaagaacactatatatactagccttcctctgaagcaatcgtgccacgatttcc--agatcgtgtcacgatttgtgtatgtcccaaggtataaccagtcc 1533080  T
Q  171 ttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||  |||||||||| || |||||||  |||||||||||||||||||    
T  1533079 ttatcaaggatacttaacgagtaagtttcacaatcgtgtcacgatttccc 1533030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 21640238 - 21640297
Alignment:
Q  161 tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  21640238 tgaccagtccttatcagtgatacttaatgagcaagtttctgaatcgtgtcacgatttccc 21640297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 20357289 - 20357231
Alignment:
Q  65 aaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgattt 123  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  20357289 aaaaagcacaagaacacaatatatactagtcttcctctgaagcaatcgtgccacgattt 20357231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 24789712 - 24789553
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccagg 159  Q
    ||||||| | ||||||||||||  |||||||||| ||||| |||||| ||||||| ||||||||||  | ||||||||| ||| |||      ||| |||    
T  24789712 cttcaaagatgcacaagaacactttatatactagccttcctctgaagcaatcgtgtcacgatttcc--aaatcgtgtcaagatttgcgtacaacccaagg 24789615  T
Q  160 t-tgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    | ||||||||||||||||  |||||||||| ||||||||||  |||||||||||||||||||    
T  24789614 tatgaccagtccttatcaaggatacttaacgagcaagtttcacaatcgtgtcacgatttccc 24789553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 20357214 - 20357154
Alignment:
Q  160 ttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||| ||||||||||  |||||||||| |||||||||||||||| ||||||||||||||    
T  20357214 ttgaccggtccttatcaaggatacttaacgagcaagtttctgaatcatgtcacgatttccc 20357154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 6592737 - 6592792
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||||||||||||    
T  6592737 gaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgattt 6592792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 6594953 - 6595008
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||||||||||||    
T  6594953 gaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgattt 6595008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 21640157 - 21640220
Alignment:
Q  60 cttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgattt 123  Q
    |||||||| |||||||||||||||||||||||||||| |  |||||| ||||||| ||||||||    
T  21640157 cttcaaaatagcacaagaacacaatatatactagtctccttctgaagcaatcgtgtcacgattt 21640220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19992552 - 19992597
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctcttaagct 46  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||    
T  19992552 ccccataggatcccctctttgacctccaagttttctctcttaagct 19992597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 32060704 - 32060759
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| |||||||||||  |||||||||||||||    
T  32060704 gaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattt 32060759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 20343684 - 20343626
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| ||||||||||   ||||||||||||||||||    
T  20343684 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttccc 20343626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 21646366 - 21646513
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacg---gtccccaggt-tgacc 165  Q
    ||||||||||||  || ||||||| ||||| ||||  |||||||| ||||||||||  |||||||| |||||| || ||||   ||||| |||| |||||    
T  21646366 gcacaagaacact-taaatactagccttcctctgataaaatcgtgtcacgatttcc--agatcgtggcacgatttg-aacgtacgtcccaaggtatgacc 21646461  T
Q  166 agtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    ||| |||||||  |||||||||| |||||||||   ||||||||||||||||    
T  21646462 agttcttatcaaggatacttaacgagcaagtttgaaaatcgtgtcacgattt 21646513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 1562312 - 1562458
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggtt-gaccagt 168  Q
    ||||||||||||| || ||||||||||||| |||    ||||||| |||||||| || | ||||||||||||| |||  | ||| | |||   |||||||    
T  1562312 gcacaagaacaca-taaatactagtcttcctctgttccaatcgtgtcacgattttccca-atcgtgtcacgatttgcgtccgtcacaaggaacgaccagt 1562409  T
Q  169 ccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    ||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  1562410 ccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 1562458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 18409214 - 18409270
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttc 218  Q
    |||||||||||||||  || ||||||| |||||||||  ||||||||||||||||||    
T  18409214 gaccagtccttatcatggaaacttaacaagcaagtttgagaatcgtgtcacgatttc 18409270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 18389160 - 18389215
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  18389160 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 18389215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 18392596 - 18392651
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  18392596 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 18392651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 18414090 - 18414148
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  || ||||||| |||||||||  ||||||||| ||||||||||    
T  18414090 gaccagtccttatcatggaaacttaacaagcaagtttgagaatcgtgttacgatttccc 18414148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 43504536 - 43504594
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  || ||||||| |||||||||   |||||||||||||||||||    
T  43504536 gaccagtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttccc 43504594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24266046 - 24266006
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctctt 41  Q
    ||||| |||||||||||||||||||| ||||| ||||||||    
T  24266046 ccccaaaggatcccctctttgatctccaagttatctctctt 24266006  T

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Target: scaffold0135 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 34858 - 34680
Alignment:
Q  42 aagctctcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacga 141  Q
    ||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  34858 aagctctcttaagattcacttcaaaaaagcaaaagaacacaatatatactagtcttcctctgaagaaatagtgccacgatttccctagatcgtgtcacga 34759  T
Q  142 tctgcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||| ||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34758 tctgcaacggacccaaggtagacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 34680  T

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Target: scaffold0355 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 64 - 220
Target Start/End: Complemental strand, 3619 - 3463
Alignment:
Q  64 aaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccaggttga 163  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  3619 aaaaaagcacaagaatacaatatatactagtcttcccctgaagaaatcgtgtcacgattttcctagatcgtgtcacgatctgcaacggtccccaggttga 3520  T
Q  164 ccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  3519 ctagtccttatcattgatacttaacgagcaagtttctgaatcgtgtcacgatttccc 3463  T

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Target: scaffold0259 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 2037 - 1865
Alignment:
Q  48 tcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgca 147  Q
    ||||||||||  ||||||| ||||||||||||||  |||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2037 tcttaaggttaccttcaaataagcacaagaacactttatatactagtcctgccctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgca 1938  T
Q  148 acggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  1937 acggtcccaaggttgaccagtccttatcagagaaacttaaccagcaagtttctgaatcgtgtcacgatttccc 1865  T

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Target: scaffold0028 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 148742 - 148570
Alignment:
Q  48 tcttaaggttgtcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgca 147  Q
    ||||||||||  ||||||| ||||||||||||||  |||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  148742 tcttaaggttaccttcaaataagcacaagaacactttatatactagtcctgccctgaagaaatcgtgtcacgatttccctagatcgtgtcacgatctgca 148643  T
Q  148 acggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  148642 acggtcccaaggttgaccagtccttatcagagaaacttaaccagcaagtttctgaatcgtgtcacgatttccc 148570  T

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Target: scaffold0009 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 176737 - 176576
Alignment:
Q  59 tcttcaaaaaagcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggtccccag 158  Q
    ||||||||| |||||||||||||  || ||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |     
T  176737 tcttcaaaagagcacaagaacactttaaatactagtcctgtcctgaggaaatcgtgccacgatttccctagatcgtgtcacgatctgcaacggacccaaa 176638  T
Q  159 gttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  176637 gttgaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttccc 176576  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 176821 - 176781
Alignment:
Q  1 ccccataggatcccctctttgatctctaagttttctctctt 41  Q
    ||||| |||||||||||||||||||| ||||| ||||||||    
T  176821 ccccaaaggatcccctctttgatctccaagttatctctctt 176781  T

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Target: scaffold0665 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 8091 - 8163
Alignment:
Q  145 gcaacggtccccaggttgaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8091 gcaacggacccaaggttgacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgattt 8163  T

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Target: scaffold0674 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 4126 - 4184
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||    
T  4126 gaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgatttccc 4184  T

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Target: scaffold0565 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 3001 - 3059
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||   ||||||||| |||||||||||| ||||||||||||||||||    
T  3001 gaccagtccttatcaagaatacttaacgagcaagtttctggatcgtgtcacgatttccc 3059  T

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Target: scaffold0286 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 22124 - 22066
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||| |||||||||||||||||||||| |||||||||   |||||||||||||||||||    
T  22124 gacctgtccttatcagtgatacttaacgagcaagttttacaatcgtgtcacgatttccc 22066  T

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Target: scaffold0491 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 11477 - 11627
Alignment:
Q  70 gcacaagaacacaatatatactagtcttcccctgaagaaatcgtgccacgatttccctagatcgtgtcacgatc--tgcaacggtccccaggtt-gacca 166  Q
    ||||||||||||  || ||||||| ||||| ||||  |||||||| ||||||||||  |||||||||||||||   |||    ||||| ||||  |||||    
T  11477 gcacaagaacact-taaatactagccttccactgataaaatcgtgtcacgatttcc--agatcgtgtcacgattggtgcgtacgtcccaaggtacgacca 11573  T
Q  167 gtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    ||||||||||  || ||||||| |||||||||   |||||||||||||||||||    
T  11574 gtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttccc 11627  T

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Target: scaffold0491; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 9124 - 9182
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccc 220  Q
    |||||||||||||||  || ||||||| |||||||||   |||||||||||||||||||    
T  9124 gaccagtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttccc 9182  T

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Target: scaffold0137 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 6044 - 5989
Alignment:
Q  162 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgattt 217  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||    
T  6044 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 5989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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