View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1974_low_2 (Length: 640)
Name: NF1974_low_2
Description: NF1974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1974_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Complemental strand, 15136937 - 15136502
Alignment:
| Q |
17 |
actatgtagcatctactaaattcatattaatttaatttacttattttagcaacattttgttcttgttgaaagaagttttaagcaaataggtttattagtt |
116 |
Q |
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| T |
15136937 |
actatgtagcatctactaaattcatattaatttattttactagttttagcaacattttgttcttgttgaaagaagttttaagcaaataggtttattagtt |
15136838 |
T |
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| Q |
117 |
aattagattttatggagcaggttgattggaaaagtagctgcagatcatagtcacaagtggatatataaagaacctaatgatcaagaaattaatttcttat |
216 |
Q |
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| T |
15136837 |
aattagattttatggagcaggttgattggaaaagtagctgcagatcatagtcacaagtggatatataaagaacctaatgatcaagaaattaatttcttat |
15136738 |
T |
|
| Q |
217 |
cagcatggcataattcagcagactcagtgagtaaaataaaactatgtatatggtattcttgcttaaattagattattattattattcttgtaatcttagt |
316 |
Q |
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| T |
15136737 |
cagcatggcataattcagcagactcagtgagtaaaataaaactatgtatatggtattcttgcttaaattagattattattattattcttataatcttagt |
15136638 |
T |
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| Q |
317 |
taatgctttcatattaaaagtttcctgaaatagatagaatgatttctttttcagcaccctaggacttgggaagctcagttcttgtctggtataaaggtat |
416 |
Q |
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| T |
15136637 |
taatgctttcatattaaaagtttcctgaaatagatagaatgatttctttttcagcaccctaggacttgggaagctcagttcttgtctggtataaaggtat |
15136538 |
T |
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| Q |
417 |
gtatatagtattcatatatgtgcagctatagccctc |
452 |
Q |
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| T |
15136537 |
gtatatagtattcatatatgtgcagctatagccctc |
15136502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 541 - 630
Target Start/End: Complemental strand, 15136446 - 15136357
Alignment:
| Q |
541 |
tatgtatcttgcagactatagccctcattgctgttagagaaggtgttgttcaattaggagctgttcacaaggttctctcttctccctttg |
630 |
Q |
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| T |
15136446 |
tatgtatcttgcagactatagccctcattgctgttagagaaggtgttgttcaattaggagctgttcacaaggttctctcttctccctttg |
15136357 |
T |
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