View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1974_low_3 (Length: 446)
Name: NF1974_low_3
Description: NF1974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1974_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 11611660 - 11611528
Alignment:
| Q |
113 |
caataaacaactctgattgagtctagcagaagaggttagtcataaacctctatacgaattcatgctttcggaggtgcctatagttagtgaagattcctct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11611660 |
caataaacaactctgattgagtctagcagaagaggttagtcagaaacctctatacgaattcatgctttcggaggtgcctatagttagtgatgattcctct |
11611561 |
T |
|
| Q |
213 |
aacatagatttttctgccagatcagggttctat |
245 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |
|
|
| T |
11611560 |
aacatagatttttcttgcagatctgggttctat |
11611528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 324 - 416
Target Start/End: Complemental strand, 11610909 - 11610817
Alignment:
| Q |
324 |
taaaaataaattattaaatttgaatatttgaattactacttgacagatcctatatagctctgcataagctcaaggaggattgaatatcgatct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
11610909 |
taaaaataaattattaaatttgaatatttgaagtactacttgacagatcctatatagctctgcataagctcaaggaggattaaatattgatct |
11610817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 11611213 - 11611157
Alignment:
| Q |
273 |
tatacagtaatatcaaacaaagttcagaaccacatttaatgtctatttttctaaaaa |
329 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
11611213 |
tatacagtaatatcaaacaaacttcagaaccatatttaatgtctatttttttaaaaa |
11611157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 11611790 - 11611700
Alignment:
| Q |
1 |
acaagttagtctaactata----aagagtgcattcattttcattttcacaattcatcaagagtgaatccttaacaattgtctaaacatatt |
87 |
Q |
| |
|
||||||||||||||||||| || | |||||||||||||| ||||||||||||||||| ||| |||||||||| ||| |||| ||||| |
|
|
| T |
11611790 |
acaagttagtctaactatatataaaaaatgcattcattttcagtttcacaattcatcaagtgtgtatccttaacatttggataaagatatt |
11611700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University