View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1974_low_7 (Length: 328)
Name: NF1974_low_7
Description: NF1974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1974_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 34952188 - 34952349
Alignment:
| Q |
15 |
tgaatgacatattcagtatacttaactctcaatcttgagtttaatgctataatttcacattatgataagtttctttaggatacgctagtcatcaagttta |
114 |
Q |
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| T |
34952188 |
tgaatgacatattcagtatacttaactctcaatcttgagtttgatgctataatttcacattatgataagtttctttaggatacgctagtcatcaagttta |
34952287 |
T |
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| Q |
115 |
tgatacactccatctgaaattcaatcggtgattatcaatgaaatatgttgagtttgcttttg |
176 |
Q |
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| T |
34952288 |
tgatacactccatctgaaattcaatcggtgattatcaatgaaatatgttgagtttgcttttg |
34952349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 189 - 321
Target Start/End: Original strand, 34952379 - 34952511
Alignment:
| Q |
189 |
tagagaatgtgtgaaattgaagttggtgtagaattgatattgatgatgaatcaatgaagcttccatgctttgcctccatccatattgaattttttaagcc |
288 |
Q |
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| T |
34952379 |
tagagaatgtgtgaaattgaagttggtgtagaattgatattgatcatgaatcaatgaagcttccatgctttgcctccatccatattgaattttttaagcc |
34952478 |
T |
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| Q |
289 |
ttccaaacaacataataagtatgagaataatct |
321 |
Q |
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| T |
34952479 |
ttccaaacaacataacaaatatgagaatgatct |
34952511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 227 - 321
Target Start/End: Original strand, 34970272 - 34970366
Alignment:
| Q |
227 |
attgatgatgaatcaatgaagcttccatgctttgcctccatccatattgaattttttaagccttccaaacaacataataagtatgagaataatct |
321 |
Q |
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| T |
34970272 |
attgatgatgaatcagagaagtttccatggcttgcctccatccatgttgaattttttaagccttccaaacaacataataagtatgagaatgatct |
34970366 |
T |
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