View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1974_low_8 (Length: 278)
Name: NF1974_low_8
Description: NF1974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1974_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 22324805 - 22325051
Alignment:
| Q |
13 |
gtagcaaaggtacaaaaatcagaaaacattttgctaattgtatccatatcaacagttctacggtaagcacgaatttctgtccgaagggtgtgcaattttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22324805 |
gtagcaaaggtacaaaaatcagaaaacattttgctaattgtatccatatcaacagttctacggtaagcacgaatttctgtccgaagggtgtgcaattttt |
22324904 |
T |
|
| Q |
113 |
taaactccacaagtaaacgagcacactgattcctcaaagtcttcaagtcatagcggtatgctatcttcatcctctcaactacattctgtgtagtgatatc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22324905 |
taaactccacaagtaaacgagcacactgattcctcaaagtcttcaagtcatagcggtatgttatcttcatcctctcaactacattctgtgtagtgatatc |
22325004 |
T |
|
| Q |
213 |
tcttatgagccttttctcaatatcctttatcagatcaattacatcat |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22325005 |
tcttatgagccttttctcaatatcctttatcaaatcaattacatcat |
22325051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University