View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1974_low_9 (Length: 272)
Name: NF1974_low_9
Description: NF1974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1974_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 33718916 - 33718667
Alignment:
| Q |
15 |
catttgcaagatccaaaaggaaatctgaaggattcatagccatagcaggagcataaccaatattagaaaaatgttgaatagcttcagacccttttccaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
33718916 |
catttgcaagatccaaaaggaaatctgaaggattcatagccatagcaggagcataaccaatattagtaaaatgttcaatagcttcagacccttttccaaa |
33718817 |
T |
|
| Q |
115 |
atacaaaacattcccttctgcaagcaacaaaactttatgaaacatataatataatctactagaaggttgatgtattgtcatcacaatagtccttccacct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718816 |
atacaaaacattcccttctgcaagcaacaaaactttatgaaacatataatataatctactagaaggttgatgtattgtcatcacaatagtccttccacct |
33718717 |
T |
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| Q |
215 |
cttgccaaatcccacaaagttgacacaattctttgtgctgtagtataatc |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33718716 |
cttgccaaatcccacaaagttgacacaattctttgtgctgtagtagaatc |
33718667 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 20688318 - 20688133
Alignment:
| Q |
15 |
catttgcaagatccaaaaggaaatctgaaggattcatagccatagcaggagcataaccaatattagaaaaatgttgaatagcttcagacccttttccaaa |
114 |
Q |
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||||||||||||||||||||||||| || || |||| || || |||| |||| |||||| ||| |||| || ||||||||||| || |||||| | |
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| T |
20688318 |
catttgcaagatccaaaaggaaatcagatgggctcatggcaatttcaggttcatatccaataccagagaaatattccatagcttcagaaccctttccata |
20688219 |
T |
|
| Q |
115 |
atacaaaacattcccttctgcaagcaacaaaactttatgaaacatataatataatctactagaaggttgatgtattgtcatcacaa |
200 |
Q |
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||||||| | ||||||| | | |||||| | |||||||||| ||||| ||||| ||||||||||||||||||||||||| |
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| T |
20688218 |
atacaaaggaactccttctgataaaatcaaaacagtgtgaaacatattatatatcctacttgaaggttgatgtattgtcatcacaa |
20688133 |
T |
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