View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19750_high_1 (Length: 483)

Name: NF19750_high_1
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19750_high_1
NF19750_high_1
[»] chr8 (20 HSPs)
chr8 (5-468)||(4891347-4891807)
chr8 (284-468)||(4906051-4906231)
chr8 (281-452)||(4713773-4713941)
chr8 (361-468)||(4777543-4777649)
chr8 (294-455)||(4687946-4688106)
chr8 (306-468)||(4914498-4914656)
chr8 (390-453)||(4735777-4735840)
chr8 (284-468)||(21440561-21440740)
chr8 (284-354)||(4725225-4725295)
chr8 (281-352)||(4744692-4744763)
chr8 (402-453)||(4744793-4744844)
chr8 (284-353)||(4926342-4926411)
chr8 (284-357)||(10445502-10445575)
chr8 (416-452)||(4702563-4702599)
chr8 (284-354)||(4735690-4735764)
chr8 (236-279)||(4713710-4713753)
chr8 (24-81)||(4891935-4891992)
chr8 (236-284)||(4725156-4725204)
chr8 (244-284)||(4744634-4744674)
chr8 (420-452)||(4995367-4995399)


Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 5 - 468
Target Start/End: Complemental strand, 4891807 - 4891347
Alignment:
Q  5 ttcttaaaggaggaaattataattcaagcatttcttaaagaagtcagtataatttattttaggtttttataacataagagataaggtgggtgtaatttaa 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4891807 ttcttaaaggagaaaattataattcaagcatttcttaaagaagtcggtataatttattttaggtttttataacataagagataaggtgggtgtaatttaa 4891708  T
Q  105 ggttataaggaggcgaatatgatttactcataaaataaaggcagttgtttacataaataaattgaagcgagatgcaactctctagcattataaattcttc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4891707 ggttataaggaggcgaatatgatttactcataaaataaaggcagttgtttacataaataaattgaagcgagatgcaactctctagcattataaattcttc 4891608  T
Q  205 gttgtataggaatatcactcatcaataatataagcaaacaatgatgggaacggtactgcattttcttttggtattctttgttttaataaaagctcaagat 304  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4891607 gttgtataggaatatcactcatcaataatataagcaaaaaatgatgggaacggtactgcattttcttttggtattctttgttttaataaaagctcaagat 4891508  T
Q  305 caatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagtaattattatagttgaagttatatatcttaatttgttc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||    
T  4891507 caatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatc---actagtaattattgtagttgaagttatatatcttaatttgttc 4891411  T
Q  405 ctcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaatttgaactatt 468  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4891410 ctcaatttatatatatcaggattcattagcttagattgtggtctacctgaaaatttgaactatt 4891347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 284 - 468
Target Start/End: Complemental strand, 4906231 - 4906051
Alignment:
Q  284 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagtaattattatagttgaa 383  Q
    ||||| ||| ||||||| ||||||||||||||| |||  |||||   ||||||||||||||||||||| ||  | |||| || | |||||| ||| ||||    
T  4906231 gttttgatacaagctcaggatcaatcaggtttgattaggaatttttctatagctgctttatgtcacatttttgttactagtaattattattgtagctgaa 4906132  T
Q  384 gttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaatttgaactatt 468  Q
    |||||    |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||    
T  4906131 gttat----cttaatttgttcctaaatttatatgtatcaggattcattagcttagactgcggtctacctgaacatttgagctatt 4906051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 281 - 452
Target Start/End: Original strand, 4713773 - 4713941
Alignment:
Q  281 tttgttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagta-attattatagt 379  Q
    |||||||| ||| ||||||| |||||||||||||||||||| ||||||  |||||||||||| |||||||||||  | |||| || || |||||| ||||    
T  4713773 tttgttttgatacaagctcaggatcaatcaggtttgtttatgaatttgtctatagctgctttctgtcacatatttgttactagtaatatattattgtagt 4713872  T
Q  380 tgaagttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacct 452  Q
    ||| ||    || |||||||||||| ||||||||||| ||||||||||||||||| |||| ||||| ||||||    
T  4713873 tgatgt----taccttaatttgttcttcaatttatatgtatcaggattcattagcatagattgtggcctacct 4713941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 361 - 468
Target Start/End: Complemental strand, 4777649 - 4777543
Alignment:
Q  361 tactagtaattattatagttgaagttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaattt 460  Q
    |||| |||||||||||||||||| | || ||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||    
T  4777649 tacttgtaattattatagttgaa-taatttatcttaatttgttcctcaatttatatgtatcaggattcattagcatagattgtggtctacctgaacattt 4777551  T
Q  461 gaactatt 468  Q
    || |||||    
T  4777550 gagctatt 4777543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 294 - 455
Target Start/End: Original strand, 4687946 - 4688106
Alignment:
Q  294 aagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagtaattattat---agttgaagttatat 390  Q
    ||||||| ||||||||||||||| |||| | ||| | ||||| | ||||||||||||||||  | ||||||||||||||||||   ||||||||||||      
T  4687946 aagctcaggatcaatcaggtttggttatgatttttcatatagttactttatgtcacatatttgttactactagtaattattattgtagttgaagttat-- 4688043  T
Q  391 atcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaa 455  Q
      ||||||||||||||| |||||||| | ||||||||||||||| |||| ||||||||| |||||    
T  4688044 --cttaatttgttcctctatttatatgtctcaggattcattagcatagattgtggtctatctgaa 4688106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 306 - 468
Target Start/End: Complemental strand, 4914656 - 4914498
Alignment:
Q  306 aatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagtaattattatagttgaagttatatatcttaatttgttcc 405  Q
    |||||||||||||||| ||||||  |||| ||||||||||||||||| |  | |||| || | ||| || ||| |||||||||    |||||||||||||    
T  4914656 aatcaggtttgtttatgaatttgtctatacctgctttatgtcacatagttgttactagtaattatttttgtagatgaagttat----cttaatttgttcc 4914561  T
Q  406 tcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaatttgaactatt 468  Q
    ||||||||||| |||||||||||||||||||||| ||||||| || |||| || |||| ||||    
T  4914560 tcaatttatatgtatcaggattcattagcttagattgtggtcaacatgaagatgtgaaatatt 4914498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 4735777 - 4735840
Alignment:
Q  390 tatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctg 453  Q
    |||||||| || ||||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  4735777 tatcttaagtttttcctcaatttatatgtatcaggattcattagcatagattgtggtctacctg 4735840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 284 - 468
Target Start/End: Complemental strand, 21440740 - 21440561
Alignment:
Q  284 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaatcactactagtaattattatagttgaa 383  Q
    ||||| ||| ||||||| ||||||||||||||||||   ||||||  |||| || ||| ||||||||||||  || | | || | ||| || ||| ||||    
T  21440740 gttttgatacaagctcaggatcaatcaggtttgttttcgaatttgtctatacctacttcatgtcacatattgttccc-agtaattatttttgtagctgaa 21440642  T
Q  384 gttatatatcttaatttgttcctcaatttatatatatcaggattcattagcttagactgtggtctacctgaaaatttgaactatt 468  Q
    |||||    |||||||||||| | ||||||||| |||||||||||||||||||||| ||||| | ||||||| ||  ||||||||    
T  21440641 gttat----cttaatttgttcataaatttatatgtatcaggattcattagcttagattgtgggcgacctgaagatgcgaactatt 21440561  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 4725225 - 4725295
Alignment:
Q  284 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatatt 354  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||  ||||||| |||| |||||||||||    
T  4725225 gttttgatacaagctcaagatcaatcaggtttgtttatgaatttgtctatagcttctttctgtcacatatt 4725295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 4744692 - 4744763
Alignment:
Q  281 tttgttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacata 352  Q
    |||||||| ||| ||||||| |||||||||||||||||||| ||||||  ||||||| |||| |||||||||    
T  4744692 tttgttttgatacaagctcaggatcaatcaggtttgtttatgaatttgtctatagcttctttctgtcacata 4744763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 402 - 453
Target Start/End: Original strand, 4744793 - 4744844
Alignment:
Q  402 ttcctcaatttatatatatcaggattcattagcttagactgtggtctacctg 453  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||| |||||||    
T  4744793 ttcctcaatttatatgtatcaggattcattagcatagattgtggcctacctg 4744844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 4926411 - 4926342
Alignment:
Q  284 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatat 353  Q
    ||||| ||| ||||||| ||||||||||||| | |||| ||||||  ||||| |||||||||||||||||    
T  4926411 gttttgatacaagctcaggatcaatcaggttgggttattaatttgtatatagttgctttatgtcacatat 4926342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 10445502 - 10445575
Alignment:
Q  284 gttttaataaaagctcaagatcaatcaggtttgtttataaatttgcttatagctgctttatgtcacatattaat 357  Q
    ||||| ||| ||||||| |||||||||||||||||||| ||||||  ||||||  |||||| ||||||| ||||    
T  10445502 gttttgatacaagctcaggatcaatcaggtttgtttatgaatttgtctatagcatctttatatcacatagtaat 10445575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 452
Target Start/End: Original strand, 4702563 - 4702599
Alignment:
Q  416 tatatcaggattcattagcttagactgtggtctacct 452  Q
    ||||||||||||||||||||||||||| |||||||||    
T  4702563 tatatcaggattcattagcttagactgcggtctacct 4702599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 4735690 - 4735764
Alignment:
Q  284 gttttaataaaagctcaagatcaatcaggtttgtttataaatttg-ct---tatagctgctttatgtcacatatt 354  Q
    ||||| ||| ||||||| |||||||||||||||||||| |||||| ||   |||||||||||| |||||||||||    
T  4735690 gttttgatacaagctcaggatcaatcaggtttgtttatgaatttgtctatatatagctgctttctgtcacatatt 4735764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 4713710 - 4713753
Alignment:
Q  236 aagcaaacaatgatgggaacggtactgcattttcttttggtatt 279  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||    
T  4713710 aagcaaacaatgatgagaatgttactgcattttcttttggtatt 4713753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 4891992 - 4891935
Alignment:
Q  24 taattcaagcatttcttaaagaagtcagtataatttattttaggtttttataacataa 81  Q
    ||||| |||||||| ||  |||||  |||||||||||||||||||||| |||||||||    
T  4891992 taatttaagcattttttttagaagcgagtataatttattttaggttttcataacataa 4891935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 4725156 - 4725204
Alignment:
Q  236 aagcaaacaatgatgggaacggtactgcattttcttttggtattctttg 284  Q
    ||||||||||||||||||| | ||| | |||||||||||||||| ||||    
T  4725156 aagcaaacaatgatgggaatgttacagtattttcttttggtattgtttg 4725204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 4744634 - 4744674
Alignment:
Q  244 aatgatgggaacggtactgcattttcttttggtattctttg 284  Q
    ||||||||||| | |||||||||||||||||||||| ||||    
T  4744634 aatgatgggaatgttactgcattttcttttggtattgtttg 4744674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 452
Target Start/End: Original strand, 4995367 - 4995399
Alignment:
Q  420 tcaggattcattagcttagactgtggtctacct 452  Q
    |||||||||||||||||||| ||||||||||||    
T  4995367 tcaggattcattagcttagattgtggtctacct 4995399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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