View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19750_high_13 (Length: 298)

Name: NF19750_high_13
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19750_high_13
NF19750_high_13
[»] chr1 (11 HSPs)
chr1 (1-279)||(8927379-8927657)
chr1 (5-279)||(8939806-8940080)
chr1 (5-229)||(8962733-8962957)
chr1 (7-200)||(9300525-9300721)
chr1 (1-212)||(9466205-9466416)
chr1 (103-193)||(9235901-9235991)
chr1 (1-86)||(9257102-9257187)
chr1 (97-128)||(9085768-9085799)
chr1 (6-84)||(9364827-9364905)
chr1 (97-129)||(8978785-8978817)
chr1 (97-197)||(9338056-9338156)
[»] chr3 (1 HSPs)
chr3 (1-200)||(9171928-9172127)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 8927379 - 8927657
Alignment:
Q  1 gttctgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaattgcnnnnnnnctagcaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||       |||||||    
T  8927379 gttctgtatccagattggatccatggtttacttgaaggtggagacgtatatatcccaattgatgaagagggagattgtagaattgcaaaaaaactagcaa 8927478  T
Q  101 ttgtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8927479 ttgtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcc 8927578  T
Q  201 cacaaatcctttcaatgcttcatcatcaagtaatagaactgtaaatacagttccaggatgtctgaatgtagaactagat 279  Q
    ||| ||||||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8927579 caccaatcctttcaatgcttcagtatcaactaatagaactgtaaatactgttccaggatgtctgaatgtagaactagat 8927657  T

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Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 279
Target Start/End: Original strand, 8939806 - 8940080
Alignment:
Q  5 tgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaattgcnnnnnnnctagcaattgt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       ||||| |||||    
T  8939806 tgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaattgatgaagagggagattttagaattgcaaagaaactagcgattgt 8939905  T
Q  105 cggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcccaca 204  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||     
T  8939906 cggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtggttcagatgcttcaaggagagggagacaaattaaaagttcccacc 8940005  T
Q  205 aatcctttcaatgcttcatcatcaagtaatagaactgtaaatacagttccaggatgtctgaatgtagaactagat 279  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||| | |||||| |||||  ||||||||||    
T  8940006 aatcctttcaatgcttcatcatcaactaatagaactgtaaatactgttgccggatgtttgaattcagaactagat 8940080  T

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Target: chr1; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 8962733 - 8962957
Alignment:
Q  5 tgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaattgcnnnnnnnctagcaattgt 104  Q
    ||||||||||||||||||| ||||| |||||||| |||||  || ||||||| || |||||||| ||||||| |||||||||       |||||||||||    
T  8962733 tgtatccagattggatccacggtttgtttgaagggggagatatacatatccctattgatgaagatggagattatagaattgcaaagaaactagcaattgt 8962832  T
Q  105 cggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcccaca 204  Q
    |||||||||||||||||||||||| || |||||||| ||  |||||||||  |||||||||||||| || ||||||  |||||| ||||||||||||||     
T  8962833 cggactttggtgcattcagtggcattcagtgcatcgaccagccatgaaaatggtggtgcagatgctacatggagagttagacaagttaaaagttcccacc 8962932  T
Q  205 aatcctttcaatgcttcatcatcaa 229  Q
    ||||||||||||| |||||| ||||    
T  8962933 aatcctttcaatgattcatcttcaa 8962957  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 9300525 - 9300721
Alignment:
Q  7 tatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaaga---gggagattttagaattgcnnnnnnnctagcaattg 103  Q
    |||||||||||||||||  ||||| ||||||| |||||| || | ||||| || ||||||||   ||  ||||| ||||||||        | |||||||    
T  9300525 tatccagattggatccacagtttagttgaaggaggagacatacaaatccctatagatgaagaacaggatgatttcagaattgcaaaaaaaatggcaattg 9300624  T
Q  104 tcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcc 200  Q
    | ||| | |||||||||||||||||  |  ||||||| |||||||||||||||||| |||| ||| | |||||||||||||||||  ||||||||||    
T  9300625 tgggattatggtgcattcagtggcaacctatgcatcgtccgtccatgaaaactgtgttgcaaatgttacaaggagagggagacaagctaaaagttcc 9300721  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 9466416 - 9466205
Alignment:
Q  1 gttctgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaattgcnnnnnnnctagcaa 100  Q
    ||||| ||||||||||||||||| | |||  ||||||| |||||| || | ||||| || || |||||||||||||| || ||| |        | || |    
T  9466416 gttctatatccagattggatccacgatttgcttgaagggggagacatacaaatccctattgacgaagagggagatttcaggattccaaaaaaaatggcga 9466317  T
Q  101 ttgtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcc 200  Q
    |||| |||||| ||||||| ||||||||  |  ||||||| || ||||||||||||||| | || ||||| ||||| || |||||||| |||||||| ||    
T  9466316 ttgttggacttcggtgcatccagtggcaacctatgcatcgtccatccatgaaaactgtgatacaaatgctacaaggtgatggagacaagttaaaagtccc 9466217  T
Q  201 cacaaatccttt 212  Q
    ||  ||||||||    
T  9466216 cagcaatccttt 9466205  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 9235991 - 9235901
Alignment:
Q  103 gtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaa 193  Q
    |||||||||||||| ||||||||| |  | ||| ||||||| ||||||||||| ||||| || |||||| |||| || ||||| |||||||    
T  9235991 gtcggactttggtgtattcagtggaatccggtggatcggccatccatgaaaaccgtggtacaaatgcttgaaggtgatggagaaaaattaa 9235901  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9257187 - 9257102
Alignment:
Q  1 gttctgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaattgc 86  Q
    ||||| ||||||||||||||||| |||||  || |||| | |||  || ||||| | || ||||||||||||||||||||||||||    
T  9257187 gttctatatccagattggatccacggtttgcttaaaggagaagaaatacatatcgctatagatgaagagggagattttagaattgc 9257102  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 128
Target Start/End: Complemental strand, 9085799 - 9085768
Alignment:
Q  97 gcaattgtcggactttggtgcattcagtggca 128  Q
    ||||||||||||||||||||||||||||||||    
T  9085799 gcaattgtcggactttggtgcattcagtggca 9085768  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 9364827 - 9364905
Alignment:
Q  6 gtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaatt 84  Q
    ||||||||| ||||||||   |||  ||||||| |||||  || ||||||| || ||||||||||||||||||||||||    
T  9364827 gtatccagactggatccacaatttgcttgaaggaggagatatacatatccctattgatgaagagggagattttagaatt 9364905  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 8978817 - 8978785
Alignment:
Q  97 gcaattgtcggactttggtgcattcagtggcac 129  Q
    |||||||| ||||||||||||||||||||||||    
T  8978817 gcaattgttggactttggtgcattcagtggcac 8978785  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 9338056 - 9338156
Alignment:
Q  97 gcaattgtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaag 196  Q
    |||| ||| ||||| ||||| || || |||||| |  ||||||| ||| | |||||| ||||| |||| ||||| ||||||||||| ||||| |||||||    
T  9338056 gcaactgtgggactatggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtgatgcaaatgctccaaggagagggggacaagttaaaag 9338155  T
Q  197 t 197  Q
    |    
T  9338156 t 9338156  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 9171928 - 9172127
Alignment:
Q  1 gttctgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaattgcnnnnnnnctagcaa 100  Q
    |||||||||||||||||||||||  ||||  ||||||| |||||  || | |||||||| ||||| ||||||||||||||||||||        | ||||    
T  9171928 gttctgtatccagattggatccacagtttgcttgaaggaggagaaatacaaatcccaatagatgatgagggagattttagaattgcgaaaaaattggcaa 9172027  T
Q  101 ttgtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcc 200  Q
    | || |||||||||||||| || |||||  |  ||||||| ||||| |||||||||||| |||| ||||| |||||||| |||||||| ||| |||||||    
T  9172028 tcgtgggactttggtgcatccaatggcaacctatgcatcgtccgtctatgaaaactgtgatgcaaatgctgcaaggagatggagacaagttacaagttcc 9172127  T

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