View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19750_high_16 (Length: 277)
Name: NF19750_high_16
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19750_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 25515779 - 25516033
Alignment:
| Q |
10 |
ataagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaacatttaacagtatgacatttttctttgtagggcaa |
109 |
Q |
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| T |
25515779 |
ataagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaacatttaacagtatgacatttttctttgtaaggcaa |
25515878 |
T |
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| Q |
110 |
tatttttgagggtctgtaattttttaaatgaatcctatagtctgttctgtccaaatgtagctagctactatgccctttcagatccaaacaaaattgttgt |
209 |
Q |
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| T |
25515879 |
tatttttgagggtctgtaattttttaaatgaatcctatagtctgttctgtccaaatgtagctagctactatgccctttcagatccaaacaaaattgttgt |
25515978 |
T |
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| Q |
210 |
gatatttgcttgttactgctttttgctgtgatctatgatttttattgttgcttgt |
264 |
Q |
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| T |
25515979 |
gatatttgcttgttactgctttttgctgtgatctatgatttttattgttgcttgt |
25516033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 67 - 255
Target Start/End: Complemental strand, 25541117 - 25540933
Alignment:
| Q |
67 |
catcctaacatttaacagtatgacatttttctttgtagggcaatatttttgagggtctgtaattttttaaatgaatcctatagtctgttctgtccaaatg |
166 |
Q |
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| T |
25541117 |
catcctaacatttaacagtaggacatttttctttgtagagcaatattttgtagggtctatgattttgtaagtgaatcctattgtctgttctgtcagattg |
25541018 |
T |
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| Q |
167 |
tagctagctactatgccctttcagatccaaacaaaattgttgtgatatttgcttgttactgctttttgctgtgatctatgatttttatt |
255 |
Q |
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| T |
25541017 |
----ttgctactatgccatttcagatccaaataaacttgttgtgatatttgcttgttactcatttttgttgtgatctatggttgttatt |
25540933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 107 - 264
Target Start/End: Complemental strand, 25526543 - 25526392
Alignment:
| Q |
107 |
caatatttttgagggtctgtaattttttaaatgaatcctatagtctgttctgtccaaatgtagctagctactatgccctttcagatccaaacaaaattgt |
206 |
Q |
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| T |
25526543 |
caatatttttgggggtctttaaatttttcagtgaatcctatattctgttctgtccaattgtagctt----ctatgcccttttagatccaaacaaa--cat |
25526450 |
T |
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| Q |
207 |
tgtgatatttgcttgttactgctttttgctgtgatctatgatttttattgttgcttgt |
264 |
Q |
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| T |
25526449 |
tttgatatttgcttgttactagtttttgttgtgatatatggtttttattgttgcttgt |
25526392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 25526673 - 25526588
Alignment:
| Q |
10 |
ataagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaacatttaacagtatgacatttt |
95 |
Q |
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| T |
25526673 |
ataagaagaatgatgaatcaaagggattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacatttt |
25526588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 107 - 264
Target Start/End: Complemental strand, 25534547 - 25534394
Alignment:
| Q |
107 |
caatatttttgagggtctgtaattttttaaatgaatcctatagtctgttctgtccaaatgtagctagctactatgccctttcagatccaaacaaaattgt |
206 |
Q |
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| T |
25534547 |
caatatttttgggggtctttaaatttttcagtgaatcctatattctgttctgtccaattgtagctt----ctatgcccttttagatccaaacaaacattt |
25534452 |
T |
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| Q |
207 |
tgtgatatttgcttgttactgctttttgctgtgatctatgatttttattgttgcttgt |
264 |
Q |
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| T |
25534451 |
tgtgatatttgcttgttaatagtttttgttgtgatacattgtttttattgttgtttgt |
25534394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 25534665 - 25534592
Alignment:
| Q |
21 |
gatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgcatcctaacatttaacagtatgacatttt |
95 |
Q |
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| T |
25534665 |
gatgaatcaaag-gattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacatttt |
25534592 |
T |
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