View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19750_high_17 (Length: 274)
Name: NF19750_high_17
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19750_high_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 274
Target Start/End: Original strand, 51803811 - 51804064
Alignment:
| Q |
21 |
attaataggttagattgagaatttatttacctggggctaggtaaccataagttccagcaataaccgtggttgtggaatcctttgctcctcttgcctgcaa |
120 |
Q |
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| T |
51803811 |
attaataggttaaattgagaatttatttacctggggctaggtaaccataagttccagcaatgaccgtggttgtggaatcctttgctcctcttgcctgcaa |
51803910 |
T |
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| Q |
121 |
aaccttagcaatcccaaaatctgcaaccttaggatggtaatcttcatccaagagaatatttgttgacttaatatctctatggataataggaaaaaccaaa |
220 |
Q |
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| T |
51803911 |
aaccttagcaatcccaaaatctgcaaccttaggatggtaatcttcatccaagagaatatttgttgacttaatatctctatggataataggaaaaaccaaa |
51804010 |
T |
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| Q |
221 |
tcatggtgaaggtatgcaacaccctgagcaattccaagtgcaatcctatacctt |
274 |
Q |
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| T |
51804011 |
tcatggtgaaggtatgcaacaccctgagcaattccaagtgcaatcctatacctt |
51804064 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 36578512 - 36578556
Alignment:
| Q |
215 |
accaaatcatggtgaaggtatgcaacaccctgagcaattccaagt |
259 |
Q |
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| T |
36578512 |
accaaatcatggtgaaggtatgcaagaccctaatcaattccaagt |
36578556 |
T |
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