View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19750_high_3 (Length: 420)
Name: NF19750_high_3
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19750_high_3 |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 50407119 - 50406700
Alignment:
| Q |
1 |
ggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407119 |
ggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaaga |
50407020 |
T |
|
| Q |
101 |
ccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttagcacaagtaacaagtgaaccagtgtttgaaaaagactgagaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50407019 |
ccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttaacacaagtaacaagtgaaccagtgtttgaaaaagactgagaat |
50406920 |
T |
|
| Q |
201 |
tagcacctatacaaatgtaaagacacatttgccaaactttcggttttggtannnnnnnagtcactgctaaccatatcataaagtaaccaaagaagttaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50406919 |
tagcacctatacaaatgtaaagacacatttgccaaactttcggttttggtatttttttagtcactgctaaccatatcataaagtaaccaaagaagttaag |
50406820 |
T |
|
| Q |
301 |
aagggaaccaattgcaagaacaacataaggtggtgtgatttcattgattaagccagagaaaacaccaaggttgccacctaagtctttgaagaaactaagg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50406819 |
aagggaaccaattgcaagaacaacataaggtggtgtgatttcattgattaagccagagaaaacaccaaggttgccacctaagtctttgaagaaactaagg |
50406720 |
T |
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| Q |
401 |
aggttaagagttgtttggtc |
420 |
Q |
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|||||||||||||||||||| |
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| T |
50406719 |
aggttaagagttgtttggtc |
50406700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 50390219 - 50389996
Alignment:
| Q |
14 |
ggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagaccaacataacctt |
113 |
Q |
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||||||||| | ||||||||||||||||| |||| ||||| | ||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||| |
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| T |
50390219 |
ggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatagcaccactaagaccaagatatcctt |
50390120 |
T |
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| Q |
114 |
ttaaaatccccaacacaacaccacgagtttcggggaaattcttagcacaagtaacaagtgaaccagtgtttgaaaaagactgagaattagcacctataca |
213 |
Q |
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||| ||| ||||| ||| | || |||| |||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |
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| T |
50390119 |
ttagaattcccaaaacagctccgcgagattcggggaaattcttaacacaagtaacaagtgaaccggtgtttgcaaaagactgagaattagcacctatgca |
50390020 |
T |
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| Q |
214 |
aatgtaaagacacatttgccaaac |
237 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
50390019 |
aatgtaaagacacatttgccaaac |
50389996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 2 - 297
Target Start/End: Complemental strand, 50393505 - 50393210
Alignment:
| Q |
2 |
gaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagac |
101 |
Q |
| |
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||||| ||||| ||||||||| | |||| |||||||||||| |||| ||||||| | ||||||||||| ||||| |||||||| || ||||||||||||| |
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| T |
50393505 |
gaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatagcagagtaaagctgtgtgattattgcaccactaagac |
50393406 |
T |
|
| Q |
102 |
caacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttagcacaagtaacaagtgaaccagtgtttgaaaaagactgagaatt |
201 |
Q |
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||||||||||||| | ||| ||||| || | || |||| ||| |||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
50393405 |
caacataacctttaagaattcccaaaaccgctccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaatt |
50393306 |
T |
|
| Q |
202 |
agcacctatacaaatgtaaagacacatttgccaaactttcggttttggtannnnnnnagtcactgctaaccatatcataaagtaaccaaagaagtt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||| || || |||| |||||| ||||||||||||||||| ||||| |
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| T |
50393305 |
agcacctatacaaatgtaaagacacatttgccaaacttttggtcttgctatttttttggtgactgataaccaaatcataaagtaaccaaaaaagtt |
50393210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 2 - 405
Target Start/End: Complemental strand, 50385086 - 50384683
Alignment:
| Q |
2 |
gaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagac |
101 |
Q |
| |
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||||| ||||| ||||||||| |||||| |||||||||||| |||| ||||||| ||||||||||||| ||||| |||||||| || |||||||| |||| |
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| T |
50385086 |
gaaatagcagcaggaagccaaccaataaacaaaatcaaagcctttgtgtcatcataataaatagcagagtaaagctgtgtgatgattgcaccactgagac |
50384987 |
T |
|
| Q |
102 |
caacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttagcacaagtaacaagtgaaccagtgtttgaaaaagactgagaatt |
201 |
Q |
| |
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||||||| ||||| | ||| ||||| || | || |||| ||| |||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
50384986 |
caacatagcctttaagaattcccaaaaccgcgccgcgagattcagggaaattcttaacacaagtcacaagtgaaccagtgtttgcaaaagactgagaatt |
50384887 |
T |
|
| Q |
202 |
agcacctatacaaatgtaaagacacatttgccaaactttcggttttggtannnnnnnagtcactgctaaccatatcataaagtaaccaaagaagttaaga |
301 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| ||| || || |||| |||||| ||||| |||||||||||||| || ||| |
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| T |
50384886 |
agcacctatacaaatgtaaagacacatttgccaaacttgtggtcttgctatttttttggtaactgataaccaaatcatgaagtaaccaaagaaattgaga |
50384787 |
T |
|
| Q |
302 |
agggaaccaattgcaagaacaacataaggtggtgtgatttcattgattaagccagagaaaacaccaaggttgccacctaagtctttgaagaaactaagga |
401 |
Q |
| |
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| | ||| |||| | ||| || ||||||| || ||| ||||||| || || | ||||||| ||||| ||| ||||||||||| |||||||||| |
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| T |
50384786 |
atagcacctattgtcaaaactacccaaggtggatagagttcgttgattagtcctgaaaggacaccaacgttgctaccaaagtctttgaaaaaactaagga |
50384687 |
T |
|
| Q |
402 |
ggtt |
405 |
Q |
| |
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|||| |
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| T |
50384686 |
ggtt |
50384683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 70 - 420
Target Start/End: Complemental strand, 41334118 - 41333768
Alignment:
| Q |
70 |
ataaagttgtgtgataatagcaccactaagaccaacataaccttttaaaatccccaacacaacaccacgagtttcggggaaattcttagcacaagtaaca |
169 |
Q |
| |
|
||||| |||||| |||||||||||||| | |||||||||||||||||||| || || ||| ||||||| | | |||||||||||| |||||||||| |
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| T |
41334118 |
ataaatttgtgtaataatagcaccacttaaaccaacataaccttttaaaagacctaaaacactaccacgactattagggaaattcttaacacaagtaact |
41334019 |
T |
|
| Q |
170 |
agtgaaccagtgtttgaaaaagactgagaattagcacctatacaaatgtaaagacacatttgccaaactttcggttttggtannnnnnnagtcactgcta |
269 |
Q |
| |
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| | ||| ||||| | ||||| |||||||| ||||| || ||||| ||||||||||||||||||||||| ||| | | | ||| || | | |
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| T |
41334018 |
aaagcacctgtgttagtaaaagtttgagaatttgcaccaatgcaaatataaagacacatttgccaaactttaggtgtatgaatttttttagtaacggaaa |
41333919 |
T |
|
| Q |
270 |
accatatcataaagtaaccaaagaagttaagaagggaaccaattgcaagaacaacataaggtggtgtgatttcattgattaagccagagaaaacaccaag |
369 |
Q |
| |
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||||||||| |||||||||||||| || | | || ||| || |||||||| ||||||||||||||||||||||||| || |||| || |||| |
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| T |
41333918 |
gccatatcatgaagtaaccaaagaaattcatgatggtaccggttaagagaacaacccaaggtggtgtgatttcattgattaaaccggagatgacgccaac |
41333819 |
T |
|
| Q |
370 |
gttgccacctaagtctttgaagaaactaaggaggttaagagttgtttggtc |
420 |
Q |
| |
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|||| |||| | |||||||||||||||||||||||| |||||||||||||| |
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|
| T |
41333818 |
gttggcaccgaggtctttgaagaaactaaggaggtttagagttgtttggtc |
41333768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 24223995 - 24223916
Alignment:
| Q |
31 |
caaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatagcaccactaagaccaacataac |
110 |
Q |
| |
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|||||||||||| |||| ||||||| ||||||||||||| |||||||||||||| || |||||||||||||||||||||| |
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| T |
24223995 |
caaaatcaaagcctttgtgtcatcataataaatagcagagtaaagttgtgtgatgattgcaccactaagaccaacataac |
24223916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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