View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19750_high_5 (Length: 379)
Name: NF19750_high_5
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19750_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 360
Target Start/End: Original strand, 40118898 - 40119243
Alignment:
| Q |
13 |
aatataagcaagaacaaaatttcaatgctagcgttggagatgcttttattaattttggtcattcaatctcatgaatgacatcaatgataaagatacgtaa |
112 |
Q |
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| T |
40118898 |
aatataagcaagaacaaaatttcaatgcaagcgttggagatgcttttattaattttggtcattcgatctcatgaatgacatcaatgataaagatacgtaa |
40118997 |
T |
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| Q |
113 |
tataatgcctaaaaagtatgtaatatagattgatttcatnnnnnnnnnnttaacaaacttttatttatatttaagctcggagaaaggaaagattaaaact |
212 |
Q |
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| T |
40118998 |
tataatgcctaaaaagtatgtaatataaattgatttcataaaaaaaaaat-agcaaatttttatttatatttaagatcggagaaaggaaatattaaaact |
40119096 |
T |
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| Q |
213 |
aactattgatcttgtgtattttttagctgactaatatccatacgaattaagaaagttaagttacgtgaaccgaaatgcatgtccatgtccatgaggtagt |
312 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40119097 |
aactattgatcttgtgtatttcttagctgactaatatc-atatgaattaagaaagttaagttacgtgaaccgaaatgcatgtccatgtccatgaggtagt |
40119195 |
T |
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| Q |
313 |
agtttattcttttcataattttgcgtgccaatatccatctatctatat |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40119196 |
agtttattcttttcataattttgcgtgccaatatccatctatatatat |
40119243 |
T |
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