View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19750_low_11 (Length: 346)
Name: NF19750_low_11
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19750_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 121 - 328
Target Start/End: Complemental strand, 26175549 - 26175339
Alignment:
| Q |
121 |
caagtcaagcaggaaatattcggtaagtcactgtatgtagagtttttcctgcgaacatacttgcaggtatatctgcagcaaactatg---caggaaaatc |
217 |
Q |
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| T |
26175549 |
caagtcaagcaggaaatattcggtaagtcactgtttgtagagtttttcctgcgaacatacttgcaggtacttctgcagcaaactatgcatcaggaaaatc |
26175450 |
T |
|
| Q |
218 |
tgcatgaaaatttatcaagagaaaaactatctgcaggtaaatccgatggaaattgatttatttatttnnnnnnntaatgcaattcaatgcattccaaacc |
317 |
Q |
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| T |
26175449 |
cgtaagaaactttatcaagagaaaaacaatctgcaggtcaaactggaggaaattgatttatttattttaaaaaataatgcaattcaatgtattccagaac |
26175350 |
T |
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| Q |
318 |
gatgaaaatat |
328 |
Q |
| |
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||||||||||| |
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| T |
26175349 |
gatgaaaatat |
26175339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 26175707 - 26175596
Alignment:
| Q |
19 |
aagaatcaaaataaaaatgtgtaaacgaactatcctctggtagatctataccttattctcaacaatgaaataaagtacaagattcctctaccagtaaata |
118 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26175707 |
aagaatcaaaatcaaaatgtgtaaacgaactatcctctggtagatctgtaccttattctcaacaatgaaataaagtacaagattcctctacc-gtaaata |
26175609 |
T |
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| Q |
119 |
atcaagtcaagca |
131 |
Q |
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| T |
26175608 |
atcaagtcaagca |
26175596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 26125654 - 26125543
Alignment:
| Q |
19 |
aagaatcaaaataaaaatgtgtaaacgaactatcctctggtagatctataccttattctcaacaatgaaataaagtacaagattcctctaccagtaaata |
118 |
Q |
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|||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26125654 |
aagaatcaaaatcaaaatgtgtaaacgaactata-tctgatagatctataccttattctcaacaatgaaataaagtacaacattcctctaccagtaaata |
26125556 |
T |
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| Q |
119 |
atcaagtcaagca |
131 |
Q |
| |
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||||||||||||| |
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| T |
26125555 |
atcaagtcaagca |
26125543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 284
Target Start/End: Complemental strand, 36320190 - 36320071
Alignment:
| Q |
165 |
tttcctgcgaacatacttgcaggtatatctgcagcaaactatgcaggaaaatctgcatgaaaatttatcaagagaaaaactatctgcaggtaaatccgat |
264 |
Q |
| |
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|||| |||||| |||||||||||||| || ||||||||||| |||||| |||| |||||||| ||||||| || | | ||||||||||||||| |
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| T |
36320190 |
tttcttgcgaatatacttgcaggtatttcggcagcaaactacgcaggagaatccgcatgaaaggatatcaagtaaacagaaaactgcaggtaaatccgcg |
36320091 |
T |
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| Q |
265 |
ggaaattgatttatttattt |
284 |
Q |
| |
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||||||||||| ||| |||| |
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| T |
36320090 |
ggaaattgattgattgattt |
36320071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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