View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19750_low_13 (Length: 327)

Name: NF19750_low_13
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19750_low_13
NF19750_low_13
[»] chr8 (1 HSPs)
chr8 (13-311)||(927340-927638)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 927340 - 927638
Alignment:
Q  13 aatatgaatccgtataatgaaaaacgtgtcttacaacaaaacaggaatatacaaaaacaaaataatgcaccagatgacttcccaaattttattagagaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  927340 aatatgaatccgtataatgaaaaacgtgtcttacaacaaaacaggaatatacaaaaacaaaataatgcaccagatgacttcccaaattttattagagaag 927439  T
Q  113 gtaatgttcatannnnnnnncatacatgattatgttactttccgagttcaataagaaaatttctgttacttttttaccccacgatgtctctcgtgtaagt 212  Q
    ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  927440 gtaatgttcatattttttttcatacatgattatgttactttccgagttcaataagaaaatttctgttacttttttaccccacgatgtctctcgtgtaagt 927539  T
Q  213 gtcacaattgtttgtgtcaaacttttggatatgatgttctggtttattaatttacttctcaggttttgaagtcaaagtagtagcaccagataactatat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  927540 gtcacaattgtttgtgtcaaacttttggatatgatgttctggtttattaatttacttttcaggttttgaagtcaaagtagtagcaccagataactatat 927638  T

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