View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19750_low_15 (Length: 298)
Name: NF19750_low_15
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19750_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 8927379 - 8927657
Alignment:
| Q |
1 |
gttctgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaattgcnnnnnnnctagcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| |
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| T |
8927379 |
gttctgtatccagattggatccatggtttacttgaaggtggagacgtatatatcccaattgatgaagagggagattgtagaattgcaaaaaaactagcaa |
8927478 |
T |
|
| Q |
101 |
ttgtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8927479 |
ttgtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcc |
8927578 |
T |
|
| Q |
201 |
cacaaatcctttcaatgcttcatcatcaagtaatagaactgtaaatacagttccaggatgtctgaatgtagaactagat |
279 |
Q |
| |
|
||| |||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8927579 |
caccaatcctttcaatgcttcagtatcaactaatagaactgtaaatactgttccaggatgtctgaatgtagaactagat |
8927657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 279
Target Start/End: Original strand, 8939806 - 8940080
Alignment:
| Q |
5 |
tgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaattgcnnnnnnnctagcaattgt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |
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| T |
8939806 |
tgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaattgatgaagagggagattttagaattgcaaagaaactagcgattgt |
8939905 |
T |
|
| Q |
105 |
cggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcccaca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8939906 |
cggactttggtgcattcagtggcactccgtgcatcgaccgtccatgaaatctgtggttcagatgcttcaaggagagggagacaaattaaaagttcccacc |
8940005 |
T |
|
| Q |
205 |
aatcctttcaatgcttcatcatcaagtaatagaactgtaaatacagttccaggatgtctgaatgtagaactagat |
279 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||| ||| | |||||| ||||| |||||||||| |
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| T |
8940006 |
aatcctttcaatgcttcatcatcaactaatagaactgtaaatactgttgccggatgtttgaattcagaactagat |
8940080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 8962733 - 8962957
Alignment:
| Q |
5 |
tgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaattgcnnnnnnnctagcaattgt |
104 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||| || ||||||| || |||||||| ||||||| ||||||||| ||||||||||| |
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| T |
8962733 |
tgtatccagattggatccacggtttgtttgaagggggagatatacatatccctattgatgaagatggagattatagaattgcaaagaaactagcaattgt |
8962832 |
T |
|
| Q |
105 |
cggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcccaca |
204 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| || ||||||||| |||||||||||||| || |||||| |||||| |||||||||||||| |
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| T |
8962833 |
cggactttggtgcattcagtggcattcagtgcatcgaccagccatgaaaatggtggtgcagatgctacatggagagttagacaagttaaaagttcccacc |
8962932 |
T |
|
| Q |
205 |
aatcctttcaatgcttcatcatcaa |
229 |
Q |
| |
|
||||||||||||| |||||| |||| |
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|
| T |
8962933 |
aatcctttcaatgattcatcttcaa |
8962957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 9300525 - 9300721
Alignment:
| Q |
7 |
tatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaaga---gggagattttagaattgcnnnnnnnctagcaattg |
103 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| |||||| || | ||||| || |||||||| || ||||| |||||||| | ||||||| |
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| T |
9300525 |
tatccagattggatccacagtttagttgaaggaggagacatacaaatccctatagatgaagaacaggatgatttcagaattgcaaaaaaaatggcaattg |
9300624 |
T |
|
| Q |
104 |
tcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcc |
200 |
Q |
| |
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| ||| | ||||||||||||||||| | ||||||| |||||||||||||||||| |||| ||| | ||||||||||||||||| |||||||||| |
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| T |
9300625 |
tgggattatggtgcattcagtggcaacctatgcatcgtccgtccatgaaaactgtgttgcaaatgttacaaggagagggagacaagctaaaagttcc |
9300721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 9466416 - 9466205
Alignment:
| Q |
1 |
gttctgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaattgcnnnnnnnctagcaa |
100 |
Q |
| |
|
||||| ||||||||||||||||| | ||| ||||||| |||||| || | ||||| || || |||||||||||||| || ||| | | || | |
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|
| T |
9466416 |
gttctatatccagattggatccacgatttgcttgaagggggagacatacaaatccctattgacgaagagggagatttcaggattccaaaaaaaatggcga |
9466317 |
T |
|
| Q |
101 |
ttgtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcc |
200 |
Q |
| |
|
|||| |||||| ||||||| |||||||| | ||||||| || ||||||||||||||| | || ||||| ||||| || |||||||| |||||||| || |
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|
| T |
9466316 |
ttgttggacttcggtgcatccagtggcaacctatgcatcgtccatccatgaaaactgtgatacaaatgctacaaggtgatggagacaagttaaaagtccc |
9466217 |
T |
|
| Q |
201 |
cacaaatccttt |
212 |
Q |
| |
|
|| |||||||| |
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|
| T |
9466216 |
cagcaatccttt |
9466205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 9235991 - 9235901
Alignment:
| Q |
103 |
gtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaa |
193 |
Q |
| |
|
|||||||||||||| ||||||||| | | ||| ||||||| ||||||||||| ||||| || |||||| |||| || ||||| ||||||| |
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|
| T |
9235991 |
gtcggactttggtgtattcagtggaatccggtggatcggccatccatgaaaaccgtggtacaaatgcttgaaggtgatggagaaaaattaa |
9235901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9257187 - 9257102
Alignment:
| Q |
1 |
gttctgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaattgc |
86 |
Q |
| |
|
||||| ||||||||||||||||| ||||| || |||| | ||| || ||||| | || |||||||||||||||||||||||||| |
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|
| T |
9257187 |
gttctatatccagattggatccacggtttgcttaaaggagaagaaatacatatcgctatagatgaagagggagattttagaattgc |
9257102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 128
Target Start/End: Complemental strand, 9085799 - 9085768
Alignment:
| Q |
97 |
gcaattgtcggactttggtgcattcagtggca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
9085799 |
gcaattgtcggactttggtgcattcagtggca |
9085768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 9364827 - 9364905
Alignment:
| Q |
6 |
gtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaatt |
84 |
Q |
| |
|
||||||||| |||||||| ||| ||||||| ||||| || ||||||| || |||||||||||||||||||||||| |
|
|
| T |
9364827 |
gtatccagactggatccacaatttgcttgaaggaggagatatacatatccctattgatgaagagggagattttagaatt |
9364905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 8978817 - 8978785
Alignment:
| Q |
97 |
gcaattgtcggactttggtgcattcagtggcac |
129 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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|
| T |
8978817 |
gcaattgttggactttggtgcattcagtggcac |
8978785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 9338056 - 9338156
Alignment:
| Q |
97 |
gcaattgtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaag |
196 |
Q |
| |
|
|||| ||| ||||| ||||| || || |||||| | ||||||| ||| | |||||| ||||| |||| ||||| ||||||||||| ||||| ||||||| |
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|
| T |
9338056 |
gcaactgtgggactatggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtgatgcaaatgctccaaggagagggggacaagttaaaag |
9338155 |
T |
|
| Q |
197 |
t |
197 |
Q |
| |
|
| |
|
|
| T |
9338156 |
t |
9338156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 9171928 - 9172127
Alignment:
| Q |
1 |
gttctgtatccagattggatccatggtttatttgaaggtggagacgtatatatcccaatcgatgaagagggagattttagaattgcnnnnnnnctagcaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| ||||| || | |||||||| ||||| |||||||||||||||||||| | |||| |
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|
| T |
9171928 |
gttctgtatccagattggatccacagtttgcttgaaggaggagaaatacaaatcccaatagatgatgagggagattttagaattgcgaaaaaattggcaa |
9172027 |
T |
|
| Q |
101 |
ttgtcggactttggtgcattcagtggcactccgtgcatcggccgtccatgaaaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcc |
200 |
Q |
| |
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| || |||||||||||||| || ||||| | ||||||| ||||| |||||||||||| |||| ||||| |||||||| |||||||| ||| ||||||| |
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|
| T |
9172028 |
tcgtgggactttggtgcatccaatggcaacctatgcatcgtccgtctatgaaaactgtgatgcaaatgctgcaaggagatggagacaagttacaagttcc |
9172127 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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