View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19750_low_16 (Length: 297)
Name: NF19750_low_16
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19750_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 81 - 289
Target Start/End: Original strand, 16382128 - 16382336
Alignment:
| Q |
81 |
tttgcatgaaccatgtttgtttggttaggttggcaaggttcatatgaggtccaccgctaatatgaattgttgaaacttgggccccatttacgtttgtggg |
180 |
Q |
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| T |
16382128 |
tttgcatgaaccatgtttgtttggttaggttggcaaggttcatatgaggtccaccgctaatatgaattgttgaaacttgggccccatttacgtttgtggg |
16382227 |
T |
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| Q |
181 |
gcatacatggaatcgtagccgttggtgttgaattaattgatggctcaccgttcaaagataaattaatggcttctcacgaggactatgttgttgctattaa |
280 |
Q |
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| T |
16382228 |
gcatacatggaatcgtagccgttggtgttgaattaattgatggctcaccgttcaaagataaattaatggcttctcacgaggactatgttgttgctattaa |
16382327 |
T |
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| Q |
281 |
gtgatgatg |
289 |
Q |
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| T |
16382328 |
gtgatgatg |
16382336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16382048 - 16382099
Alignment:
| Q |
1 |
ccttggtttgatttgattgaatatagttggtgatgtggaataatgaagtagt |
52 |
Q |
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| T |
16382048 |
ccttggtttgatttgattgaatatagttggtgatgtggaataatgaagtagt |
16382099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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