View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19750_low_17 (Length: 296)
Name: NF19750_low_17
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19750_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 41292969 - 41293231
Alignment:
| Q |
22 |
ctaccctttttcacacacttcatttcaacctatactaactttcattttctgcacctatcctctcaacttattctttcaaatataattaaccatcaatttg |
121 |
Q |
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| T |
41292969 |
ctaccctttttcacacacttcatttcaacctatactaactttcattttctgcacctatcctctcaacttattctttcaaatataataaaccatcaatttg |
41293068 |
T |
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| Q |
122 |
gtttcaaaactatcacattctctccagtttgatgaataaactatagaaatatactaaataatccttatactactactaatctatcaagttaatccttcaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41293069 |
gtttcaaaactatcacattctctccagtttgatgaataaactatagaaatatactaaataatccttatactactactaatctatcaagttaatccttcaa |
41293168 |
T |
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| Q |
222 |
atctcttaaaaattggtttatggactacttttatagataaatctcttaaccacccattatatt |
284 |
Q |
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| T |
41293169 |
atctcttaaaaattggtttatggactaattttatagataaatctcttaaccacccattatatt |
41293231 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 27938405 - 27938458
Alignment:
| Q |
168 |
aaatatactaaataatccttatactactactaatctatcaagttaatccttcaa |
221 |
Q |
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||||||| ||||||||||||| |||| || |||||||||||||| |||||||| |
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| T |
27938405 |
aaatataataaataatccttaaactattatcaatctatcaagttagtccttcaa |
27938458 |
T |
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