View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19750_low_2 (Length: 473)
Name: NF19750_low_2
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19750_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 22 - 461
Target Start/End: Original strand, 6958656 - 6959096
Alignment:
| Q |
22 |
aagtcaaaatctaatccgaaccggggtttaattcatctaccaaagttcattcaagagagtagttctgttacatta-accatcatcttttttcccttttct |
120 |
Q |
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| T |
6958656 |
aagtcaaaatctaatccgaaccggggtttaattcatctgccaaagttcattcaagagagtagttctgttacattacaccatcatcttttttcccttttct |
6958755 |
T |
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| Q |
121 |
ggggctacttgacgctcnnnnnnngtctttttccttctgagcaagcattcggtagaataaagaactaacaattaacaaattttatgccatactatagttg |
220 |
Q |
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| T |
6958756 |
ggggctacttgacgctctttttttgtctttttctttctgagcaagcattcggtagaataaagagctaacaattaacaaattttatgccatactatagttg |
6958855 |
T |
|
| Q |
221 |
caattcattcagtatgttgattgtagaatttgaatttattttgttagatattttataatcattttgtttgtacactgttgtggtaatgtttctatctgtt |
320 |
Q |
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| T |
6958856 |
caattcattcagtatgttgattgtagaatttgaatttattttgttagatattttataatcattttgtttgtacactgttgtggtaatgtttctatctgtt |
6958955 |
T |
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| Q |
321 |
aacattttgtaaatgttatgtagattggtgatgccttgaagaagttgtttgctaatggagtagttaagcgtgaagagatgtggatcacatccaagctatg |
420 |
Q |
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| T |
6958956 |
aacattttgtaaatgttatgtagattggtgatgccttgaagaagttgtttgctaatggagtagttaagcgtgaagagatgtggatcacgtccaagctatg |
6959055 |
T |
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| Q |
421 |
gtttgtccttttattactaacagagttgttaagcgtatatt |
461 |
Q |
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| T |
6959056 |
gtttgtccttttattactaacagagttgttaagcgtatatt |
6959096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 291 - 432
Target Start/End: Original strand, 6976817 - 6976960
Alignment:
| Q |
291 |
tacactgttgtggtaatgtttctatctgttaacattttgtaaatgttatgt--agattggtgatgccttgaagaagttgtttgctaatggagtagttaag |
388 |
Q |
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||||| || |||||| ||||| ||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6976817 |
tacaccgtcgtggtagtgtttatatctactaacattttgtaaatttaatgtgtagattggtgatgccttgaagaagttgtttgctaatggagttgttaag |
6976916 |
T |
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| Q |
389 |
cgtgaagagatgtggatcacatccaagctatggtttgtcctttt |
432 |
Q |
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| T |
6976917 |
cgtgaagagatgtggatcacatccaagctgtggtttgttctttt |
6976960 |
T |
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