View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19750_low_24 (Length: 223)
Name: NF19750_low_24
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19750_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 4487525 - 4487729
Alignment:
| Q |
1 |
gtaaaccaaagagctgtgctgagctgaaactctgggttcggttctctctcgagataccaaacaactaacattgtgtaaatcaagattgcacctgtaacca |
100 |
Q |
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| T |
4487525 |
gtaaaccaaagagctgtactgagctgaaactctgggttcggttctctctcgagataccaaacaactaacattgtgtaaatcaagattgcacctgtaacca |
4487624 |
T |
|
| Q |
101 |
gccacaattccaaggtaaatggcttcataaacatccatgctgactctccaggcttcatcggaactatcattgacaatcctgattctacatatggcactgt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4487625 |
gccataattccaaggtaaatggcttcataaacatccatgctgactctccaggcttcatcggaactatcattgacaatcctgattctgcatatggcactgt |
4487724 |
T |
|
| Q |
201 |
aaaat |
205 |
Q |
| |
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||||| |
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| T |
4487725 |
aaaat |
4487729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 4482570 - 4482750
Alignment:
| Q |
25 |
tgaaactctgggttcggttctctctcgagataccaaacaactaacattgtgtaaatcaagattgcacctgtaaccagccacaattccaaggtaaatggct |
124 |
Q |
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|||||||||||||| ||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
4482570 |
tgaaactctgggttgggtactctctctagataccaaacaacacacattgtgtaaatcaagattgcacctgtacccagccacaattcccaggtaaatggct |
4482669 |
T |
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| Q |
125 |
tcataaacatccatgctgactctccaggcttcatcggaactatcattgacaatcctgattctacatatggcactgtaaaat |
205 |
Q |
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||||||||||||||||||| ||| | | ||||| ||||||||||| ||||||||||||||| ||||||||| |||||||| |
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| T |
4482670 |
tcataaacatccatgctgaatcttccgtcttcaatggaactatcatcgacaatcctgattctgcatatggcaatgtaaaat |
4482750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 34606591 - 34606411
Alignment:
| Q |
25 |
tgaaactctgggttcggttctctctcgagataccaaacaactaacattgtgtaaatcaagattgcacctgtaaccagccacaattccaaggtaaatggct |
124 |
Q |
| |
|
||||||||||| || ||| ||||| || ||||| || |||| |||||| ||||||||||| |||| || |||| ||||| || | |||| || |||| |
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| T |
34606591 |
tgaaactctggattatcttccctctccaggtaccacactactaccattgtataaatcaagatgacaccagttaccacccacatttgccaggtgaagggct |
34606492 |
T |
|
| Q |
125 |
tcataaacatccatgctgactctccaggcttcatcggaactatcattgacaatcctgattctacatatggcactgtaaaat |
205 |
Q |
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||||||||||||||||||| ||| ||| |||| || ||||||||| ||||||||||| ||| |||||||||| ||||||| |
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| T |
34606491 |
tcataaacatccatgctgattcttcagacttctccgtaactatcatcgacaatcctgactctgcatatggcacagtaaaat |
34606411 |
T |
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