View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19750_low_8 (Length: 353)
Name: NF19750_low_8
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19750_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 35 - 335
Target Start/End: Original strand, 6348282 - 6348582
Alignment:
| Q |
35 |
cctaatgaattaaatatctaattagtacctgattcaatgttgtgtgtagcaagaacaacagatccttttccattagcaaacttgtcaagcaaataagatg |
134 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6348282 |
cctaatgaattaaatatctaataagtacctgattcaatgttgtgtgtagcaagaacaacagatccttttccattagcaaacttctcaagcaaataagatg |
6348381 |
T |
|
| Q |
135 |
aacaatcattgaagcaattatgtgtatcttcaatagtatcatgaattggtgatttagacccaaaagattcagccaatgtactttctgtagacatataagc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6348382 |
aacaatcattgaagcaattatgtgtatctttaatagtatcatgaattggtgacttagacccaaaagattcagccaatgtactttctgttgacatataagc |
6348481 |
T |
|
| Q |
235 |
acctctaaccaacttaaatcccataggaattccaattttttcagcagcttgtgttgcaagaaacaatctctccttagcatctttcaaataagtttgaatt |
334 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6348482 |
acctctaaccaatttaaatcccataggaattccaattttttcagcagcttttgttgcaagaaacaatctctccttagcatctttcaaataagtttgaatt |
6348581 |
T |
|
| Q |
335 |
g |
335 |
Q |
| |
|
| |
|
|
| T |
6348582 |
g |
6348582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 50 - 335
Target Start/End: Original strand, 6326061 - 6326346
Alignment:
| Q |
50 |
atctaattagtacctgattcaatgttgtgtgtagcaagaacaacagatccttttccattagcaaacttgtcaagcaaataagatgaacaatcattgaagc |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6326061 |
atctaattagtacctgattcaatgttgtgtgtagcaagaacaacagatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaagc |
6326160 |
T |
|
| Q |
150 |
aattatgtgtatcttcaatagtatcatgaattggtgatttagacccaaaagattcagccaatgtactttctgtagacatataagcacctctaaccaactt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
6326161 |
aattatgtgtatcttcaatagtatcatgaattggtgacttagacccaaaagattcagccaatgtactttctgtggacatataagcacctctaaccaattt |
6326260 |
T |
|
| Q |
250 |
aaatcccataggaattccaattttttcagcagcttgtgttgcaagaaacaatctctccttagcatctttcaaataagtttgaattg |
335 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6326261 |
aaatcccataggaattccaatttcttcagcagcttttgttgcaagaaacaatctctccttagcatctttcaaataagtttgaattg |
6326346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 50 - 335
Target Start/End: Original strand, 6333017 - 6333302
Alignment:
| Q |
50 |
atctaattagtacctgattcaatgttgtgtgtagcaagaacaacagatccttttccattagcaaacttgtcaagcaaataagatgaacaatcattgaagc |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6333017 |
atctaattagtacctgattcaatgttgtgtgtagcaagaacaacagatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaagc |
6333116 |
T |
|
| Q |
150 |
aattatgtgtatcttcaatagtatcatgaattggtgatttagacccaaaagattcagccaatgtactttctgtagacatataagcacctctaaccaactt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
6333117 |
aattatgtgtatcttcaatagtatcatgaattggtgacttagacccaaaagattcagccaatgtactttctgtggacatataagcacctctaaccaattt |
6333216 |
T |
|
| Q |
250 |
aaatcccataggaattccaattttttcagcagcttgtgttgcaagaaacaatctctccttagcatctttcaaataagtttgaattg |
335 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6333217 |
aaatcccataggaattccaatttcttcagcagcttttgttgcaagaaacaatctctccttagcatctttcaaataagtttgaattg |
6333302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 104 - 333
Target Start/End: Complemental strand, 6490339 - 6490110
Alignment:
| Q |
104 |
ccattagcaaacttgtcaagcaaataagatgaacaatcattgaagcaattatgtgtatcttcaatagtatcatgaattggtgatttagacccaaaagatt |
203 |
Q |
| |
|
|||||||||| ||| ||||||| ||| ||||||||||||||| || ||||||||||| | |||||| | |||||||||||| | | || ||| |
|
|
| T |
6490339 |
ccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattggtgaagcatatcccaaatcag |
6490240 |
T |
|
| Q |
204 |
cagccaatgtactttctgtagacatataagcacctctaaccaacttaaatcccataggaattccaattttttcagcagcttgtgttgcaagaaacaatct |
303 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||||||||||||||||||||||| || || || ||||| |||||||| | || ||| | |||| ||| |
|
|
| T |
6490239 |
cagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccattttctcagcagcctttgatgccaacaacattct |
6490140 |
T |
|
| Q |
304 |
ctccttagcatctttcaaataagtttgaat |
333 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
6490139 |
ctccttagcgtctttcaaataagtttgaat |
6490110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University