View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19750_low_9 (Length: 348)

Name: NF19750_low_9
Description: NF19750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19750_low_9
NF19750_low_9
[»] chr4 (2 HSPs)
chr4 (10-325)||(47503510-47503820)
chr4 (139-213)||(28336545-28336619)
[»] chr3 (4 HSPs)
chr3 (139-210)||(11483872-11483943)
chr3 (140-190)||(22310118-22310168)
chr3 (140-189)||(45207373-45207422)
chr3 (135-190)||(27175121-27175176)
[»] chr1 (1 HSPs)
chr1 (141-213)||(49130006-49130078)
[»] chr2 (3 HSPs)
chr2 (134-194)||(9070891-9070951)
chr2 (143-194)||(18140999-18141050)
chr2 (139-189)||(42083394-42083444)
[»] scaffold0477 (1 HSPs)
scaffold0477 (140-188)||(1136-1184)
[»] chr6 (2 HSPs)
chr6 (140-188)||(4650119-4650167)
chr6 (139-190)||(446014-446065)
[»] chr5 (1 HSPs)
chr5 (134-190)||(22635983-22636039)
[»] chr8 (2 HSPs)
chr8 (144-219)||(5336241-5336316)
chr8 (140-194)||(23890359-23890413)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 325
Target Start/End: Original strand, 47503510 - 47503820
Alignment:
Q  10 attatactactactcagtttatttggattgcatcagttttaagagggaaaatatttaatccaaagnnnnnnnattctgttatttcatcattcaatcaatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||||||||||||||||||    
T  47503510 attatactactactcagtttatttggattgcatcagttttaagagggaaaatatttaatccgaagtttttttattctgttatttcatcattcaatcaatt 47503609  T
Q  110 agatttgtaatcaacaatgatacatatcatatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgctatgctaatttccctc 209  Q
    ||||||||||||||||||||||||||     ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  47503610 agatttgtaatcaacaatgatacata-----tcatacttactctaaaagctaattaagtcaagcaattgcttaaccctaattgctatgataatttccctc 47503704  T
Q  210 ctaatcacattgccaatcttacacaacaagctaacatgcatcgttaaataaagcgacctaggttatagttccagggtaaaatagggcagcggcctattta 309  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47503705 ctaatcacattgccaatcttacacaacaagctaacatgcatcattaaatagagcgacctaggttatagttctagggtaaaatagggcagcggcctattta 47503804  T
Q  310 actactcccttcgtcc 325  Q
    |||||||||| |||||    
T  47503805 actactccctccgtcc 47503820  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 28336619 - 28336545
Alignment:
Q  139 tatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgctatgctaatttccctcctaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||    
T  28336619 tatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcctaa 28336545  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 11483943 - 11483872
Alignment:
Q  139 tatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgctatgctaatttccctcc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11483943 tatcatacttactctaaaagctaattaggtcaagcaattgcttagccctaattgctatgctaatttccctcc 11483872  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 22310168 - 22310118
Alignment:
Q  140 atcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaat 190  Q
    |||||||||| |||||||||| ||||||||||| || ||||||||||||||    
T  22310168 atcatacttattctaaaagcttattaggtcaagtaaatgcttaaccctaat 22310118  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 45207373 - 45207422
Alignment:
Q  140 atcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaa 189  Q
    |||||||||||| ||||||||||||||||||||| ||  |||||||||||    
T  45207373 atcatacttactttaaaagctaattaggtcaagctataacttaaccctaa 45207422  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 27175176 - 27175121
Alignment:
Q  135 atcatatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaat 190  Q
    ||||||||||||||||| | |||||| ||||||||||||  ||||| |||||||||    
T  27175176 atcatatcatacttactatgaaagcttattaggtcaagcttttgctaaaccctaat 27175121  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 49130078 - 49130006
Alignment:
Q  141 tcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgctatgctaatttccctcctaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  49130078 tcatacttactctaaaagctaattaggtcaagcaattgcttagccctaattactatgctaatttccctcctaa 49130006  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 9070891 - 9070951
Alignment:
Q  134 tatcatatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgct 194  Q
    |||||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||    
T  9070891 tatcatatcatacttattataaaagccaattaggtcaagcaaatgcttaaccctaattgct 9070951  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 18141050 - 18140999
Alignment:
Q  143 atacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgct 194  Q
    ||||||| | ||||||| ||||||||||||||| ||||||||||||||||||    
T  18141050 atacttattataaaagccaattaggtcaagcaaatgcttaaccctaattgct 18140999  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 42083394 - 42083444
Alignment:
Q  139 tatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaa 189  Q
    ||||||||||||| ||||||||||||||||||||| ||  |||||||||||    
T  42083394 tatcatacttactttaaaagctaattaggtcaagctataacttaaccctaa 42083444  T

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Target: scaffold0477 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 1184 - 1136
Alignment:
Q  140 atcatacttactctaaaagctaattaggtcaagcaattgcttaacccta 188  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| |||||    
T  1184 atcatacttactctaaaagctaattaggtaaagcaattgtttagcccta 1136  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 4650167 - 4650119
Alignment:
Q  140 atcatacttactctaaaagctaattaggtcaagcaattgcttaacccta 188  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| |||||    
T  4650167 atcatacttactctaaaagctaattaggtaaagcaattgtttagcccta 4650119  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 446065 - 446014
Alignment:
Q  139 tatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaat 190  Q
    ||||||||||||| |||||||| |||| ||||||||  ||||||||||||||    
T  446065 tatcatacttactttaaaagcttattatgtcaagcagatgcttaaccctaat 446014  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 22636039 - 22635983
Alignment:
Q  134 tatcatatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaat 190  Q
    |||||||||||||||||| ||||||||||||||| |||||   |||| |||||||||    
T  22636039 tatcatatcatacttactttaaaagctaattagggcaagcttatgctaaaccctaat 22635983  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 5336241 - 5336316
Alignment:
Q  144 tacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgctatgctaatttccctcctaatcacat 219  Q
    |||||| | ||||||  ||||||||||||||| |||||||||||||||||| |  || ||||||||| || |||||    
T  5336241 tacttattataaaagtcaattaggtcaagcaaatgcttaaccctaattgcttttgtattttccctcccaaacacat 5336316  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 23890359 - 23890413
Alignment:
Q  140 atcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgct 194  Q
    |||||||||||| |||||||| || |||||||||  ||||| |||||||||||||    
T  23890359 atcatacttactataaaagcttataaggtcaagcttttgctaaaccctaattgct 23890413  T

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