View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19751_low_1 (Length: 551)
Name: NF19751_low_1
Description: NF19751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19751_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 15 - 502
Target Start/End: Original strand, 493538 - 494021
Alignment:
| Q |
15 |
aaaacaaaaggagcatgcatatatacctgagaaataactccaagaacccctaaagaaactcttgctgcattaagatcttggtgagattcattaagatttc |
114 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
493538 |
aaaacaaaaggaacatgcata----cctgagaaataactccaagaacccctaaagaaactctggctgcattaagatcttgatgagattcattaagatttc |
493633 |
T |
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| Q |
115 |
gaaccttagcatatccatcttcacatcctgcagggctaactattctaatatgtgttacatactcatgaacagcacttcctttaccccacaatgtacttcc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
493634 |
gaaccttagcatatccatcttcacatcctgcagggctaactattctaatatgtgttacatactcatgaacagcacttcctttaccccacaatgtacttcc |
493733 |
T |
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| Q |
215 |
atgtgcaccggtgctaattaggccaccaatggttaaaccccaccaatatggtgtatttggcagagccatttcaaaccttgcagcctcactaattatctct |
314 |
Q |
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| T |
493734 |
atgtgcaccagtgctaattaggccaccaatggttaaaccccaccaatatggtgtatttggcagagccatttcaaaccttgcagcctcactgattatctct |
493833 |
T |
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| Q |
315 |
ctcaatgttacaccgctctctaccgtcattctcaacaatttgacatcgactttcaacacacggttgagattttttgtgcttattagaagtccattatcat |
414 |
Q |
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| T |
493834 |
ctcaatgttacaccgctctctaccgtcattctcaacaatttgacatcgactttcaacacacggttgagattttttgtgcttattagaagtccattatcat |
493933 |
T |
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| Q |
415 |
cgggacaagctagttttggtatgctgtgagagaagcgcgttgcaactttcacttttctgctgttttttgaagctaacgcgactattga |
502 |
Q |
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| T |
493934 |
cgggacaagctagttttggtatgctgtgagagaagcgcgttgcaactttcacttttctgttgttttttgaagctaacgcgactattga |
494021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 292 - 502
Target Start/End: Complemental strand, 49013754 - 49013535
Alignment:
| Q |
292 |
ttgcagcctcactaattatctctctcaatgttacaccgctctctaccgtcattctcaacaatttgacatcgactttcaacacacggttgagattttttgt |
391 |
Q |
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|||||||||||||||| |||| ||||||||| ||||| |||||||| | ||| ||| | ||||| | |||||||||| ||||||| |||||| |
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| T |
49013754 |
ttgcagcctcactaatgatctgtctcaatgtcacaccactctctacacttattgtcattgcatccacatcaattttcaacacattgttgagaaattttgt |
49013655 |
T |
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| Q |
392 |
gcttattagaagtccatt---------atcatcgggacaagctagttttggtatgctgtgagagaagcgcgttgcaactttcacttttctgctgtttttt |
482 |
Q |
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| T |
49013654 |
gcttaccagaagtccattttgggtatcatcatcaggacaagttagctttggaatgctgtgggagaagcgcgtcgcaactttcatttttctgttgttttct |
49013555 |
T |
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| Q |
483 |
gaagctaacgcgactattga |
502 |
Q |
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| T |
49013554 |
gaagctaacgcgactattga |
49013535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 551
Target Start/End: Original strand, 5396359 - 5396397
Alignment:
| Q |
513 |
ctcattcattacttttgctgcaacaaacaaaagcatacc |
551 |
Q |
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| T |
5396359 |
ctcattcattacttctgctgcaacaaacaaaagcatacc |
5396397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 9063943 - 9063844
Alignment:
| Q |
171 |
acatactcatgaacagcacttcctttaccccacaatgtacttccatgtgcaccggtgctaattaggccaccaatggttaaaccccaccaatatggtgtat |
270 |
Q |
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| T |
9063943 |
acatagtcatgaaccgcacttcctttccccgacaatgtgcttccatgagcaccagttccgatcattccacctattgttaaaccataccaatatggtgtat |
9063844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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