View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19751_low_2 (Length: 449)
Name: NF19751_low_2
Description: NF19751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19751_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 4 - 449
Target Start/End: Original strand, 33221721 - 33222166
Alignment:
| Q |
4 |
ctaactatcgactaatcataactaatttgtaactactttaaacgatattcaactaattataacaaatttctaactatatgtaacggttagagttgaacta |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33221721 |
ctaactatcgactaatcataactaatttgtaactactttaaacgatattcaactaagtataacaaatttctaactatatgtaacggttagagttgaacta |
33221820 |
T |
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| Q |
104 |
ttgctctattcaacttaactgttatcatttcatatgtaatattataatataacattattacttatcttcattttttagggactataaattatcagcttat |
203 |
Q |
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| T |
33221821 |
ttgctctattcaacttaactgttatcatttcatatgtaatattataatataacattattacttatcttcattttttagggactataaattatcagcttat |
33221920 |
T |
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| Q |
204 |
aaagagaggctttctcgcgttgttgaggagttggttaaacatctggcaacatgcgaacggcaaataagttagtaaactttaagctgtttcatgtttcttt |
303 |
Q |
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| T |
33221921 |
aaagagaggctttctcgcgttgttgaggagttggttaaacatctggcaacatgcgaacggcaaataagttagtaaactttaagctgtttcatgtttcttt |
33222020 |
T |
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| Q |
304 |
atcgctctgagattttgatctcaaatagtgctataacaagagcttatatctgtttgttgcaggaaatgtagatgatttaactagccgcacgaataactat |
403 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33222021 |
acccctctgagattttgatctcaaatagtgctataacaagagcttatatctgtttgttgcaggaaatgtagatgatttaactagccgcacgaataactat |
33222120 |
T |
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| Q |
404 |
cgtaagcccaaagatattgatgattgttttaaagctttgatccacc |
449 |
Q |
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| T |
33222121 |
cgtaagcccaaagatattgttgattgtttgaaagctttgatccacc |
33222166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 13232685 - 13232654
Alignment:
| Q |
14 |
actaatcataactaatttgtaactactttaaa |
45 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
13232685 |
actaatcataactaatttgtaactactttaaa |
13232654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 31677360 - 31677427
Alignment:
| Q |
14 |
actaatcataactaatttgtaactactttaaacgata-ttcaactaattataacaaatttctaactat |
80 |
Q |
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|||||||||||||||||| |||||| |||||| ||| || ||||||||||||||||| || |||||| |
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| T |
31677360 |
actaatcataactaatttataactattttaaataatattttaactaattataacaaatctcaaactat |
31677427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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