View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19751_low_4 (Length: 318)
Name: NF19751_low_4
Description: NF19751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19751_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 40721977 - 40722263
Alignment:
| Q |
19 |
gtatgactcgacttgtcgaggaaaacggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatatagaatc |
118 |
Q |
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| T |
40721977 |
gtatgactcgacttgtcgtggaaaacgaaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatataaaatc |
40722076 |
T |
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| Q |
119 |
taaaactacctctattttgtgatggatcttgcaagaacataaccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacggctagagaaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40722077 |
taaaactacctctattttgtgatggatcttgcaagaacataaccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacagctagagaaca |
40722176 |
T |
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| Q |
219 |
aaagaagaagagggtgtttacgtttggtaaccgtgtgtcataaacgagagagatggtggtattgttgacttatgcagttttctccac |
305 |
Q |
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| T |
40722177 |
aaagaagaagagggtgtttacgtttggtaaccgtgtgtcataaacgagagagatggtggtattgttgacttatgcagttttctccac |
40722263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 16003633 - 16003916
Alignment:
| Q |
19 |
gtatgactcgacttgtcgaggaaaacggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatatagaatc |
118 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
16003633 |
gtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgaaaggaaatcaatataaaatc |
16003732 |
T |
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| Q |
119 |
taaaactacctctattttgtgatggatcttgcaagaacataaccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacggctagagaaca |
218 |
Q |
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| T |
16003733 |
taaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacagctagagaata |
16003832 |
T |
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| Q |
219 |
aaagaagaagagggtgtttacgtttggtaaccgtgtgtcataaacgagagagatggtggtattgttgacttatgcagttttctccac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||||||| |
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| T |
16003833 |
aaagaagaagagggtgtttacgtttggtaaccgtgtgtcataaatgagagaga---tggtattgttgacttatgtaattttctccac |
16003916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 26795013 - 26795299
Alignment:
| Q |
19 |
gtatgactcgacttgtcgaggaaaacggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatatagaatc |
118 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26795013 |
gtatgactcgacttgtggaggaaaacggaactagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatatagaatc |
26795112 |
T |
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| Q |
119 |
taaaactacctctattttgtgatggatcttgcaagaacataaccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacggctagagaaca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| |
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| T |
26795113 |
taaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaacagctgtagaaaagcatgggaaaaagacagctagagaaca |
26795212 |
T |
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| Q |
219 |
a---aagaagaagagggtgtttacgtttggtaaccgtgtgtcataaacgagagagatggtggtattgttgacttatgcagttttctccac |
305 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||||||| |
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| T |
26795213 |
aaagaagaagaagagggtgtttacgtttggtaaccgtgtgtcataaatgagagaga---tggtattgttgacttatgaaattttctccac |
26795299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 61 - 262
Target Start/End: Complemental strand, 27222063 - 27221862
Alignment:
| Q |
61 |
tttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacataa |
160 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27222063 |
tttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacagaa |
27221964 |
T |
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| Q |
161 |
ccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacggctagagaacaaaagaagaagagggtgtttacgtttggtaaccgtgtgtcata |
260 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27221963 |
ccatatttatggtggtaagagctgcagaaaagcatgggaaaaagacagctagagaacaaaagaagaagaggttgtttacgtttggtaaccgtgtgtcata |
27221864 |
T |
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| Q |
261 |
aa |
262 |
Q |
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|| |
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| T |
27221863 |
aa |
27221862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 27222864 - 27222822
Alignment:
| Q |
18 |
agtatgactcgacttgtcgaggaaaacggaaccagggtgaata |
60 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27222864 |
agtatgactcgacttgtggaggaaaacggaaccagggtgaata |
27222822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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